1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaggcggggcgggcgtgtgcgtgggtgtgctggggtggggggttgcgtgcggtgggggattcggtgatgtgcctgtgccaactaggcatcctgctcctccttctcccaccttgcacctcctagcaccctgaccatatacctcctagcaccgtgaccaaacacgcacgcacgtcttcacacgcgcagGCGTGTTCAACCCCGCCAAGCTGTTTGGTGTGACCACGCTGGACGTGGTGCGGGCCGAGGCATTCATCGGGGAGCTGACCGGCACGGACCCCCGGGACGT
species | Chlamydomonas reinhardtii |
transcript | EDP06365 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCCCGTCAACAGCACGGTGCCCATCGCGGCCGAGGTGCTGCAGAAGGCCG GCGTGTTCA-CCCCGCCAAGCTGTTTGGTGTGACCACGCEST: gi|15368085|gb|BI527511.1|BI527511
genomic: CCCCGTCAACAGCACGGTGCCCATCGCGGCCGAGGTGCTGCAGAAGGCCGgtgaggcggg ... acacgcgcagGCGTGTTCAACCCCGCCAAGCTGTTTGGTGTGACCACGC
EST: CCCGTCAACAGCACGGTGCCCATCGCGGCCGAGGTGCTGCAGAAGGGCCG GCGTGTTCAACCEST: gi|161807946|gb|FC097564.1|FC097564
genomic: CCCGTCAACAGCACGGTGCCCATCGCGGCCGAGGTGCTGCAGAAGG-CCGgtgaggcggg ... acacgcgcagGCGTGTTCAACC
EST: CCCCGTCAACAGCACGGTGCCAATCGCGGCCGAGGTGCTGCAGAAGGCCG GCGTGTTCAACCCCGCCAAGCTGTTTGGTGTGACCACGCTGGACGTGGTGCEST: gi|8576780|gb|BE129417.1|BE129417
genomic: CCCCGTCAACAGCACGGTGCCCATCGCGGCCGAGGTGCTGCAGAAGGCCGgtgaggcggg ... acacgcgcagGCGTGTTCAACCCCGCCAAGCTGTTTGGTGTGACCACGCTGGACGTGGTGC
EST: CCCCGTCAACAGCACGGTGCCCATCGCGGCCGAGGTGCTGCAGAAGGCCG GCGTGTTCAACCCCGC
genomic: CCCCGTCAACAGCACGGTGCCCATCGCGGCCGAGGTGCTGCAGAAGGCCGgtgaggcggg ... acacgcgcagGCGTGTTCAACCCCGC
ccatatacctcctagcaccgtgaccaaacacgcacgcacgtcttcacacgcgcagGCGTGTTCAACCCCGCCAAGCTGTTTGGTGTGACCACGCTGGACGTGGTGCGGGCCGAGGCATTCATCGGGGAGCTGACCGGCACGGACCCCCGGGACGT
tcttcac CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggcggggcgggcgtgtgcgtgggtgtgctggggtggggggttgcgtgcggtgggggattcggtgatgtgcctgtgccaactaggcatcctgctcctccttctcccaccttgcacctcctagcaccctgaccatatacctcctagcaccgtgaccaaacacgcacgcacgtcttcacacgcgcagGCGTGTTCAACCCCGCCAAGCTGTTTGGTGTGACCACGCTGGACGTGGTGCGGGCCGAGGCATTCATCGGGGAGCTGACCGGCACGGACCCCCGGGACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA