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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgggggcatggcaaggcttctaccagtatagcgtgaattgggtgcgaagtctcacggttcgggggtcaagcagctttccagggcgtgtgaaaaggagcacggcggcacggcctgcccctgttgagtcccttttggcctctctgatttgtcctgtggccttcggaatttgccagGTATGGCTGACAACCTGCTGACGTGTGTGGTACGTGCCTGGGACTTCCGCAAGCCCCTGCTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06363
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6545751|gb|AV391535.1|AV391535
EST:     GCTGGTGGTTGCACCGCTGTCCGCCAACAGCCTGGCCAAGCTGGCAAACG                         GTATGGCTGACAACCTGCTGACGTGTGTGGTACGTGCCTGGGACTTCCGCA
genomic: GCTGGTGGTTGCACCGCTGTCCGCCAACAGCCTGGCCAAGCTGGCAAACGgtgcgggggc ... aatttgccagGTATGGCTGACAACCTGCTGACGTGTGTGGTACGTGCCTGGGACTTCCGCA
EST: gi|49461363|gb|BP089276.1|BP089276
EST:     GCTGGTGGTTGCACCGCTGTCCGCCAACAGCCTGGCCAAGCTGGCAAACG                         GTATGGCTGACAACCTGCTGACGTGTGTGGTACG
genomic: GCTGGTGGTTGCACCGCTGTCCGCCAACAGCCTGGCCAAGCTGGCAAACGgtgcgggggc ... aatttgccagGTATGGCTGACAACCTGCTGACGTGTGTGGTACG
EST: gi|14234911|gb|BG853727.1|BG853727
EST:     GCTGGTGGTTGCACCGCTGTCCGCCAACAGCCTGGCCAAGCTGGCAAACG                         GTATGGCTGACAACCTGCTGACGTGTGTGGTACGTGCCTGGGACTTCCGCA
genomic: GCTGGTGGTTGCACCGCTGTCCGCCAACAGCCTGGCCAAGCTGGCAAACGgtgcgggggc ... aatttgccagGTATGGCTGACAACCTGCTGACGTGTGTGGTACGTGCCTGGGACTTCCGCA
EST: gi|9028079|gb|BE238119.1|BE238119
EST:     GCTGGTGGTTGCACCGCTGTCCGCCAACAGCCTGGCCAAGCTGGCAAACG                         GTATGGCTGACAACCTGCTGACGTGTGTGGTACGTGCCTGGGACTTCCGCA
genomic: GCTGGTGGTTGCACCGCTGTCCGCCAACAGCCTGGCCAAGCTGGCAAACGgtgcgggggc ... aatttgccagGTATGGCTGACAACCTGCTGACGTGTGTGGTACGTGCCTGGGACTTCCGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgagtcccttttggcctctctgatttgtcctgtggccttcggaatttgccagGTATGGCTGACAACCTGCTGACGTGTGTGGTACGTGCCTGGGACTTCCGCAAGCCCCTGCTG
                    ctctgat  putative branch site (score: 4)
                                             aattt  TA-rich tract