1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagaacacacgcgcaagcggtgggaggaatgcagttaccatggacattcacgaacagctacaagtggcggcaatccgacttcgcgcgcctggcttctgtgccgtgggtgggcccggccttgccttcgacgtctccgccttccctctcgccaatccccgccagGACGAGACGGAGTGGCGGCAATGGCGCGCCGTGGGCGACCCCGTGCTTCACATCGACCTGCGCCGCTGGGCCGACGTGCTGGTGGTTGCACCGCTGTCCG
species | Chlamydomonas reinhardtii |
transcript | EDP06363 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTTCATCAACGAGGACGAGCTGCCGGATGCGGTGAAGCCGATTCTAGGG GACGAGACGGAGTGGCGGCAATGGCGCGCCGTGGGCGACCCCGTGCTTCACEST: gi|49461363|gb|BP089276.1|BP089276
genomic: ATTTCATCAACGAGGACGAGCTGCCGGATGCGGTGAAGCCGATTCTAGGGgtaagaacac ... tccccgccagGACGAGACGGAGTGGCGGCAATGGCGCGCCGTGGGCGACCCCGTGCTTCAC
EST: ATTTCATCAACGAGGACGAGCTGCCGGATGCGGTGAAGCCGATTCTAGGG GACGAGACGGAGTGGCGGCAATGGCGCGCCGTGGGCGACCCCGTGCTTCACEST: gi|14234911|gb|BG853727.1|BG853727
genomic: ATTTCATCAACGAGGACGAGCTGCCGGATGCGGTGAAGCCGATTCTAGGGgtaagaacac ... tccccgccagGACGAGACGGAGTGGCGGCAATGGCGCGCCGTGGGCGACCCCGTGCTTCAC
EST: ATTTCATCAACGAGGACGAGCTGCCGGATGCGGTGAAGCCGATTCTAGGG GACGAGACGGAGTGGCGGCAATGGCGCGCCGTGGGCGACCCCGTGCTTCACEST: gi|9028079|gb|BE238119.1|BE238119
genomic: ATTTCATCAACGAGGACGAGCTGCCGGATGCGGTGAAGCCGATTCTAGGGgtaagaacac ... tccccgccagGACGAGACGGAGTGGCGGCAATGGCGCGCCGTGGGCGACCCCGTGCTTCAC
EST: ATTTCATCAACGAGGACGAGCTGCCGGATGCGGTGAAGCCGATTCTAGGG GACGAGACGGAGTGGCGGCAATGGCGCGCCGTGGGCGACCCCGTGCTTCAC
genomic: ATTTCATCAACGAGGACGAGCTGCCGGATGCGGTGAAGCCGATTCTAGGGgtaagaacac ... tccccgccagGACGAGACGGAGTGGCGGCAATGGCGCGCCGTGGGCGACCCCGTGCTTCAC
tgggcccggccttgccttcgacgtctccgccttccctctcgccaatccccgccagGACGAGACGGAGTGGCGGCAATGGCGCGCCGTGGGCGACCCCGTGCTTCACATCGACCTGCGCCGCTGGGCCGACGTGCTGGTGGTTGCACCGCTGTCCG
tctccgccttccctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacacacgcgcaagcggtgggaggaatgcagttaccatggacattcacgaacagctacaagtggcggcaatccgacttcgcgcgcctggcttctgtgccgtgggtgggcccggccttgccttcgacgtctccgccttccctctcgccaatccccgccagGACGAGACGGAGTGGCGGCAATGGCGCGCCGTGGGCGACCCCGTGCTTCACATCGACCTGCGCCGCTGGGCCGACGTGCTGGTGGTTGCACCGCTGTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG