1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atagcttctgcccgtgtcgggctttcgtcagcctcagtgggatgcacatgaatagcatcacatgcacactcacacaaacacacaccatacacacgcacagGGCGACGTAAACGAGCACCTGGAGGGCGTGCGCAAGTCCATCAACGTGATGGCCGAGGGCTGGACCCCGGCGGAGAAGGAGCACTGCCTGGCGGAGACCG
species | Chlamydomonas reinhardtii |
transcript | EDP06362 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGCAG GGCGACGTAAACGAGCACCTGGAGGGCGTGCGCAAGTCCATCAACGTGATGEST: gi|14227126|gb|BG845942.1|BG845942
genomic: TGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGCAGgtgggaggac ... acacgcacagGGCGACGTAAACGAGCACCTGGAGGGCGTGCGCAAGTCCATCAACGTGATG
EST: TGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGCAG GGCGACGTAAACGAGCACCTGGAGGGCGTGCGCAAGTCCATCAACGTGATGEST: gi|14238283|gb|BG857099.1|BG857099
genomic: TGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGCAGgtgggaggac ... acacgcacagGGCGACGTAAACGAGCACCTGGAGGGCGTGCGCAAGTCCATCAACGTGATG
EST: TGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGCAG GGCGACGTAAACGAGCACCTGGAGGGCGEST: gi|16438093|gb|BM003313.1|BM003313
genomic: TGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGCAGgtgggaggac ... acacgcacagGGCGACGTAAACGAGCACCTGGAGGGCG
EST: TGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGCAG GGCGACGTAAACGAGEST: gi|10770350|gb|AV621175.1|AV621175
genomic: TGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGCAGgtgggaggac ... acacgcacagGGCGACGTAAACGAG
EST: TGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGCAG GGCGACGTAAACGAGCACCTGGAGGGCGTGCGCAAGTCCATCAACGTGATG
genomic: TGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGCAGgtgggaggac ... acacgcacagGGCGACGTAAACGAGCACCTGGAGGGCGTGCGCAAGTCCATCAACGTGATG
acatgaatagcatcacatgcacactcacacaaacacacaccatacacacgcacagGGCGACGTAAACGAGCACCTGGAGGGCGTGCGCAAGTCCATCAACGTGATGGCCGAGGGCTGGACCCCGGCGGAGAAGGAGCACTGCCTGGCGGAGACCG
cactcac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagcttctgcccgtgtcgggctttcgtcagcctcagtgggatgcacatgaatagcatcacatgcacactcacacaaacacacaccatacacacgcacagGGCGACGTAAACGAGCACCTGGAGGGCGTGCGCAAGTCCATCAACGTGATGGCCGAGGGCTGGACCCCGGCGGAGAAGGAGCACTGCCTGGCGGAGACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - -agcctca
- - - - - - - - - - - - - - - - - - - - -atgcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaca