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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtttgtggttgcatgcgcttactggcactcgtccgggcgatctaacgaccttacggcccgcagGCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACCAGGCGCCTAAGGAGGGCGAGAAGGAGGCCCCCAAGCAAGGCCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06362
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10126949|gb|BE725653.1|BE725653
EST:     TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGG                         GCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
genomic: TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGGgtgcgtttgt ... cggcccgcagGCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
EST: gi|14227126|gb|BG845942.1|BG845942
EST:     TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGG                         GCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
genomic: TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGGgtgcgtttgt ... cggcccgcagGCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
EST: gi|14238859|gb|BG857675.1|BG857675
EST:     TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGG                         GCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
genomic: TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGGgtgcgtttgt ... cggcccgcagGCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
EST: gi|15704927|gb|BI729232.1|BI729232
EST:     TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGG                         GCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
genomic: TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGGgtgcgtttgt ... cggcccgcagGCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
EST: gi|161800183|gb|FC086679.1|FC086679
EST:     TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGG                         GCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
genomic: TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGGgtgcgtttgt ... cggcccgcagGCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
EST: gi|15370025|gb|BI529451.1|BI529451
EST:     TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGG                         GCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
genomic: TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGGgtgcgtttgt ... cggcccgcagGCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
EST: gi|14238283|gb|BG857099.1|BG857099
EST:     CACGGCCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGG                         GCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
genomic: CACGG-CCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGGgtgcgtttgt ... cggcccgcagGCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
EST: gi|16438093|gb|BM003313.1|BM003313
EST:     TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGG                         GCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
genomic: TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGGgtgcgtttgt ... cggcccgcagGCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
EST: gi|16072111|gb|BI874107.1|BI874107
EST:     TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGG                         GCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
genomic: TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGGgtgcgtttgt ... cggcccgcagGCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
EST: gi|15702530|gb|BI726835.1|BI726835
EST:     TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGG                         GCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
genomic: TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGGgtgcgtttgt ... cggcccgcagGCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
EST: gi|15704928|gb|BI729233.1|BI729233
EST:     TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGG                         GCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
genomic: TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGGgtgcgtttgt ... cggcccgcagGCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
EST: gi|16071574|gb|BI873570.1|BI873570
EST:     TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGG                         GCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
genomic: TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGGgtgcgtttgt ... cggcccgcagGCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
EST: gi|10779481|gb|AV636161.1|AV636161
EST:     TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGG                         GCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC
genomic: TCACGGCCATGGCTCGAGTGGCACGGCGGTGCTGACGGAGAAGGACAAGGgtgcgtttgt ... cggcccgcagGCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgtttgtggttgcatgcgcttactggcactcgtccgggcgatctaacgaccttacggcccgcagGCTTTATTGCTGAGATGCGCAAGGTGGCAATGAAGCTGCATACGAAGGACCAGGCGCCTAAGGAGGGCGAGAAGGAGGCCCCCAAGCAAGGCCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG