Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCGCTCGTTCACCTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcctgagcagcggcacgcagataaccggggtctgtggagttgggtctaaacggcataaattctcaacgataggcagtaaggccagggtcagacg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06359
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9460047|gb|BE453037.1|BE453037
EST:     CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTG                         GCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
genomic: CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcct ... cactccccagGCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
EST: gi|22061479|gb|BQ814276.1|BQ814276
EST:     CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTG                         GCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
genomic: CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcct ... cactccccagGCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
EST: gi|14228058|gb|BG846874.1|BG846874
EST:     CTTCGTCCTGAAGACCTACCCCGCCTCCATCCTCCTGAAGAAGGCCGCTG                         GCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
genomic: CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcct ... cactccccagGCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
EST: gi|10776277|gb|AV632957.1|AV632957
EST:     CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTG                         GCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
genomic: CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcct ... cactccccagGCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
EST: gi|14242515|gb|BG861331.1|BG861331
EST:     CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTG                         GCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
genomic: CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcct ... cactccccagGCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
EST: gi|14232323|gb|BG851139.1|BG851139
EST:     CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTG                         GCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
genomic: CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcct ... cactccccagGCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
EST: gi|22076132|gb|BQ824908.1|BQ824908
EST:     CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTG                         GCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
genomic: CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcct ... cactccccagGCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
EST: gi|15703713|gb|BI728018.1|BI728018
EST:     CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTG                         GCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
genomic: CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcct ... cactccccagGCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
EST: gi|16072714|gb|BI874710.1|BI874710
EST:     CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTG                         GCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
genomic: CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcct ... cactccccagGCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
EST: gi|14228059|gb|BG846875.1|BG846875
EST:     CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTG                         GCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
genomic: CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcct ... cactccccagGCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
EST: gi|15373308|gb|BI532734.1|BI532734
EST:     CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTG                         GCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
genomic: CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcct ... cactccccagGCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
EST: gi|16436205|gb|BM001425.1|BM001425
EST:     CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTG                         GCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
genomic: CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcct ... cactccccagGCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
EST: gi|10776269|gb|AV632949.1|AV632949
EST:     CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTG                         GCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
genomic: CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcct ... cactccccagGCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
EST: gi|6544356|gb|AV390140.1|AV390140
EST:     CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTG                         GCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
genomic: CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcct ... cactccccagGCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
EST: gi|15369242|gb|BI528668.1|BI528668
EST:     CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTG                         GCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
genomic: CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcct ... cactccccagGCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
EST: gi|14232134|gb|BG850950.1|BG850950
EST:     CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTG                         GCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA
genomic: CTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcct ... cactccccagGCATCGACCGTGGTGCCAGCAAGCCCAACAAGGAGAACGTGGGCCAGGTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCGCTCGTTCACCTTCGTCCTGAAGACCTCCCCCGCCTCCATCCTCCTGAAGAAGGCCGCTGgtgcgttcctgagcagcggcacgcagataaccggggtctgtggagttgggtctaaacggcataaattctcaacgataggcagtaaggccagggtcagacg

- - - - - - - - - - CTGAAG
- - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcataaa