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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gataatactacgaattggggttggggtcattttacgtgcggcctgaggccctggcgcgggagctcaccttgtggctgctgtgcatctcggctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTCCTCCTGTGGGCCCCGCTCTTGGTTCCAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06359
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9460047|gb|BE453037.1|BE453037
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
EST: gi|22061479|gb|BQ814276.1|BQ814276
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
EST: gi|14228058|gb|BG846874.1|BG846874
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
EST: gi|10776277|gb|AV632957.1|AV632957
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
EST: gi|14242515|gb|BG861331.1|BG861331
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
EST: gi|14232323|gb|BG851139.1|BG851139
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
EST: gi|22076132|gb|BQ824908.1|BQ824908
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
EST: gi|15703713|gb|BI728018.1|BI728018
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
EST: gi|16072714|gb|BI874710.1|BI874710
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
EST: gi|14228059|gb|BG846875.1|BG846875
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
EST: gi|15373308|gb|BI532734.1|BI532734
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
EST: gi|10784493|gb|AV641165.1|AV641165
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGAT
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGAT
EST: gi|16436205|gb|BM001425.1|BM001425
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
EST: gi|10776269|gb|AV632949.1|AV632949
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
EST: gi|6544356|gb|AV390140.1|AV390140
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
EST: gi|15369242|gb|BI528668.1|BI528668
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
EST: gi|14232134|gb|BG850950.1|BG850950
EST:     CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGG                         TGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC
genomic: CGCCCGCGTGGCCACTGCTAACCGCAAGGTCACCACCATGGCTGCTAAGGgtgcgtcgtg ... ctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggccctggcgcgggagctcaccttgtggctgctgtgcatctcggctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTCCTCCTGTGGGCCCCGCTCTTGGTTCCAAG
               agctcac  putative branch site (score: 3)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gataatactacgaattggggttggggtcattttacgtgcggcctgaggccctggcgcgggagctcaccttgtggctgctgtgcatctcggctgcgcgcagTGACCGGCAAGATTAAGCTGGCTCTGCCCGCTGGCAAGGCCAACCCCGCTCCTCCTGTGGGCCCCGCTCTTGGTTCCAAG

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