1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCATCCGCTCGCGCGAGTTCCTGTGGCAGGAGGGCCACACCGCCTTCGCCACGCAGGAGGAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCGgtgagggagggagccgggggcaaggggacgggggctttggtgggtgagggggggggggttgttgtgacctttcctaggaaggcaaacggggagagaaccg...
species | Chlamydomonas reinhardtii |
transcript | EDP06304 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACGCAGGAGGAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCG CGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTCEST: gi|15372884|gb|BI532310.1|BI532310
genomic: ACGCAGGAGGAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCGgtgagggagg ... acccgcacagCGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTC
EST: GAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCG CGGCGCGTATGAGGACCTGCTGGCTGTACCGGTGACCAAGGGCAAAAAGTCEST: gi|15695018|gb|BI719339.1|BI719339
genomic: GAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCGgtgagggagg ... acccgcacagCGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTC
EST: ACGCAGGAGGAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCG CGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTCEST: gi|14229526|gb|BG848342.1|BG848342
genomic: ACGCAGGAGGAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCGgtgagggagg ... acccgcacagCGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTC
EST: ACGCAGGAGGAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCG CGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTC
genomic: ACGCAGGAGGAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCGgtgagggagg ... acccgcacagCGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATCCGCTCGCGCGAGTTCCTGTGGCAGGAGGGCCACACCGCCTTCGCCACGCAGGAGGAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCGgtgagggagggagccgggggcaaggggacgggggctttggtgggtgagggggggggggttgttgtgacctttcctaggaaggcaaacggggagagaaccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgttgt