1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtgcccgctgtcacgagccttacctgacctgccctgacctttccctgccctgcccttccctcccttcctcccccctccctgcccacacgcacacgcccagGTGATGTACCCCTACTTCTCCCAGTGGATCCGCTCGCACCGCGACCTGCCGCTGCGCCTGAACCAGTGGACCAACGTGGTGCGCTGGGAGTTCAAGTACC
species | Chlamydomonas reinhardtii |
transcript | EDP06304 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAACAGCACCATGGAGAAGCCCATCGCCATCCGCCCCACCTCGGAGACG GTGATGTACCCCTACTTCTCCCAGTGGATCCGCTCGCACCGCGACCTGCCGEST: gi|15372072|gb|BI531498.1|BI531498
genomic: GCAACAGCACCATGGAGAAGCCCATCGCCATCCGCCCCACCTCGGAGACGgtgagggcgg ... acacgcccagGTGATGTACCCCTACTTCTCCCAGTGGATCCGCTCGCACCGCGACCTGCCG
EST: GCAACAGCACCATGGAGAAGCCCATCGCCATCCGCCCCACCTCGGAGACG GTGATGTACCCCTACTTCTACCAGTAGGATCCGCTTGCACCGCGACCTGACEST: gi|14229526|gb|BG848342.1|BG848342
genomic: GCAACAGCACCATGGAGAAGCCCATCGCCATCCGCCCCACCTCGGAGACGgtgagggcgg ... acacgcccagGTGATGTACCCCTACTTCTCCCAGT-GGATCCGCTCGCACCGCGACCTGCC
EST: GCAACAGCACCATGGAGAAGCCCATCGCCATCCGCCCCACCTCGGAGACG GTGATGTACCCCTACTTCTCCCAGTGGATCCGCTCGCACCGCGACCTGCCG
genomic: GCAACAGCACCATGGAGAAGCCCATCGCCATCCGCCCCACCTCGGAGACGgtgagggcgg ... acacgcccagGTGATGTACCCCTACTTCTCCCAGTGGATCCGCTCGCACCGCGACCTGCCG
tgccctgcccttccctcccttcctcccccctccctgcccacacgcacacgcccagGTGATGTACCCCTACTTCTCCCAGTGGATCCGCTCGCACCGCGACCTGCCGCTGCGCCTGAACCAGTGGACCAACGTGGTGCGCTGGGAGTTCAAGTACC
cccttccctcccttcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcccgctgtcacgagccttacctgacctgccctgacctttccctgccctgcccttccctcccttcctcccccctccctgcccacacgcacacgcccagGTGATGTACCCCTACTTCTCCCAGTGGATCCGCTCGCACCGCGACCTGCCGCTGCGCCTGAACCAGTGGACCAACGTGGTGCGCTGGGAGTTCAAGTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA