1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttggacggatgcagccacttactagccactgttaacggtcacacgctccaactcgcacctatgcccatttcggccatccctctcttcctcctcccctcagGCGACGAGAGTGAAGTGATGATGGACGCACACACGCAGGCTGGGTTCATTGTGGGAGTGCCCTTCGCCGCCAAG
species | Chlamydomonas reinhardtii |
transcript | EDP06299 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGACCGGCAGGGCGTGATTGACATGTCCGTGAAGCTAGGCTTCCTCACAG GCGACGAGAGTGAAGTGATGATGGACGCACACACGCAGGCTGGGTTCATTGEST: gi|10772676|gb|AV623499.1|AV623499
genomic: CGACCGGCAGGGCGTGATTGACATGTCCGTGAAGCTAGGCTTCCTCACAGgtagggaggg ... ctcccctcagGCGACGAGAGTGAAGTGATGATGGACGCACACACGCAGGCTGGGTTCATTG
EST: CGACCGGCAGGGCGTGATTGACATGTCCGTGAAGCTAGGCTTCCTCACAG GCGACGAGAGTGAAGTGATGATGGACGCACACACGCAGGCTGGGTTCATTG
genomic: CGACCGGCAGGGCGTGATTGACATGTCCGTGAAGCTAGGCTTCCTCACAGgtagggaggg ... ctcccctcagGCGACGAGAGTGAAGTGATGATGGACGCACACACGCAGGCTGGGTTCATTG
ctccaactcgcacctatgcccatttcggccatccctctcttcctcctcccctcagGCGACGAGAGTGAAGTGATGATGGACGCACACACGCAGGCTGGGTTCATTGTGGGAGTGCCCTTCGCCGCCAAG
tgcccatttcggccat CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggacggatgcagccacttactagccactgttaacggtcacacgctccaactcgcacctatgcccatttcggccatccctctcttcctcctcccctcagGCGACGAGAGTGAAGTGATGATGGACGCACACACGCAGGCTGGGTTCATTGTGGGAGTGCCCTTCGCCGCCAAG
- - - - - - agccact
- - - - - - - - acttact
- - - - - - - - - - - - - - - - - - - -cacacgc
- - - - - - - - - - - - - - - - - - - - - - - - - actcgca