1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctggggtctgtaagatgcactttgcatgcgacacttgattcaaacctcgcaccctgcacacgcaacctgcacttgcatgcgtcaccctgcaaccctgcagCGGCGTGAAGATCATCGGCGCCACGGCGCACTTCGCCACCGCCGAGCTGGACGCCGGCCCTATCATCGACCAGGCAGTGGCGCGCATCACACACCGCGAC
species | Chlamydomonas reinhardtii |
transcript | EDP06292 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGCCCGCCTTCGAGGGTGCGCGGCCCTACCACCGCGCGCATGAGCG CGGCGTGAAGATCATCGGCGCCACGGCGCACTTCGCCACCGCCGAGCTGGAEST: gi|15370795|gb|BI530221.1|BI530221
genomic: TTCCTGCCCGCCTTCGAGGGTGCGCGGCCCTACCACCGCGCGCATGAGCGgtgagattgg ... aaccctgcagCGGCGTGAAGATCATCGGCGCCACGGCGCACTTCGCCACCGCCGAGCTGGA
EST: TTCCTGCCCGCCTTCGAGGGTGCGCGGCCCTACCACCGCGCGCATGAGCG CGGCGTGAAGATCATTCG-CGCCACGGCGCACTTCGCCACCGCCGAGCTGG
genomic: TTCCTGCCCGCCTTCGAGGGTGCGCGGCCCTACCACCGCGCGCATGAGCGgtgagattgg ... aaccctgcagCGGCGTGAAGATCAT-CGGCGCCACGGCGCACTTCGCCACCGCCGAGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggggtctgtaagatgcactttgcatgcgacacttgattcaaacctcgcaccctgcacacgcaacctgcacttgcatgcgtcaccctgcaaccctgcagCGGCGTGAAGATCATCGGCGCCACGGCGCACTTCGCCACCGCCGAGCTGGACGCCGGCCCTATCATCGACCAGGCAGTGGCGCGCATCACACACCGCGAC
- - -gtctgta
- - - - - - agatgca
- - - - - - - - - - -ttgcatg
- - - - - - - - - - - - - - - acacttg
- - - - - - - - - - - - - - - - - - -attcaaa
- - - - - - - - - - - - - - - - - - - - - - -ctcgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctgca