1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgtggttgcgttgacagagagcacagccgaaaggaaaacgagcctgttgtttcaaaatgtgattgtgtacacacacacgcgcgcgctgctgccgtgtagGACCACTGCCTGTACGACCTGCTCATCCGGCTGCGCAGCGGCGAGCTGCGGTGCGAGATCCCCTTCATCATCTCCAACCACCCCGACCTGAAGCAT
species | Chlamydomonas reinhardtii |
transcript | EDP06292 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGCCTACAAGAACAAGGTGAAGCGCATGGCGGTGCTGGTGTCCAAGCAG GACCACTGCCTGTACGACCTGCTCATCCGGCTGCGCAGCGGCGAGCTGCGGEST: gi|49459199|gb|BP087112.1|BP087112
genomic: TCGCCTACAAGAACAAGGTGAAGCGCATGGCGGTGCTGGTGTCCAAGCAGgtgagcggcc ... tgccgtgtagGACCACTGCCTGTACGACCTGCTCATCCGGCTGCGCAGCGGCGAGCTGCGG
EST: TCGCCTACAAGAACAAGGTGAAGCGCATGGCGGTGCTGGTGTCCAAGCAG GACCACTGCCTGTACGACCTGCTCATCCGGCTGCGCAGCGGCGAGCTGCGGEST: gi|15368129|gb|BI527555.1|BI527555
genomic: TCGCCTACAAGAACAAGGTGAAGCGCATGGCGGTGCTGGTGTCCAAGCAGgtgagcggcc ... tgccgtgtagGACCACTGCCTGTACGACCTGCTCATCCGGCTGCGCAGCGGCGAGCTGCGG
EST: TCGCCTACAAGAACAAGGTGAAGCGCATGGCGGTGCTGGTGTCCAAGCAG GACCACTGCCTGTACGACCTGCTCATCCGGCTGCGCAGCGGCGAGCTGCGG
genomic: TCGCCTACAAGAACAAGGTGAAGCGCATGGCGGTGCTGGTGTCCAAGCAGgtgagcggcc ... tgccgtgtagGACCACTGCCTGTACGACCTGCTCATCCGGCTGCGCAGCGGCGAGCTGCGG
tgttgtttcaaaatgtgattgtgtacacacacacgcgcgcgctgctgccgtgtagGACCACTGCCTGTACGACCTGCTCATCCGGCTGCGCAGCGGCGAGCTGCGGTGCGAGATCCCCTTCATCATCTCCAACCACCCCGACCTGAAGCAT
tttcaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtggttgcgttgacagagagcacagccgaaaggaaaacgagcctgttgtttcaaaatgtgattgtgtacacacacacgcgcgcgctgctgccgtgtagGACCACTGCCTGTACGACCTGCTCATCCGGCTGCGCAGCGGCGAGCTGCGGTGCGAGATCCCCTTCATCATCTCCAACCACCCCGACCTGAAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
-tgtggtt
- - - - - - tgacaga
- - - - - - - - - -gagcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaca