1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGACTTCACAGTGGCCATGGAGGACCTGCCGCCGGGCAGCGCCAGCACCGCGCCGCGTGTGTTCTACGTGGAGGGCGAGGGCATCGAGCGCTTCGCGCAGgtgggtgcttgggaacgtggagaatgtaagggtgggtaaggaggacgagttcgtgcgctgttgggagcttgtgtggaggggcgtgggcgaagacgtgtgt...
species | Chlamydomonas reinhardtii |
transcript | EDP06261 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CGCCGCGTGTGTTCTACGTGGAGGGCGAGGGCATCGAGCGCTTCGCGCAG ATGACCAACTGGGACTACTACGAGGCGGTGAAGCGCTTCCAACGCGTGCTG
genomic: CGCCGCGTGTGTTCTACGTGGAGGGCGAGGGCATCGAGCGCTTCGCGCAGgtgggtgctt ... cctcccccagATGACCAACTGGGACTACTACGAGGCGGTGAAGCGCTTCCAACGCGTGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACTTCACAGTGGCCATGGAGGACCTGCCGCCGGGCAGCGCCAGCACCGCGCCGCGTGTGTTCTACGTGGAGGGCGAGGGCATCGAGCGCTTCGCGCAGgtgggtgcttgggaacgtggagaatgtaagggtgggtaaggaggacgagttcgtgcgctgttgggagcttgtgtggaggggcgtgggcgaagacgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacgtgt