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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggaggaggccggccggttgcggggctgcggggctggtggcggcgtgggagaagagggggagagggggatggcgcactcggtggcaaggccagggccgggtgctcgacacttacgggcaacgcatcggcctggtttgcgaaccgcaagatgtgtatttgtgtgcgcgcgctgtgcagGTGCGTGCGGTGCGCGGCGTGTTGGACGAGCTGGGGCCGCAGCAGCTGACGTACGAGACCAACGCACTCAACCAGACGGCGGTGCAGCGGCGCGAGGTGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP06261
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15701577|gb|BI725882.1|BI725882
EST:     ACCGCATCTTCCCCATCAGCGCAGCCACCGGGCAGGGCGTCATCGAGCTG                         GTGCGTGCGGTGCGCGGCGTGTTGGACGAGCTGGGGCCGCAGCAGCTGACG
genomic: ACCGCATCTTCCCCATCAGCGCAGCCACCGGGCAGGGCGTCATCGAGCTGgtagggagga ... cgctgtgcagGTGCGTGCGGTGCGCGGCGTGTTGGACGAGCTGGGGCCGCAGCAGCTGACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcggcctggtttgcgaaccgcaagatgtgtatttgtgtgcgcgcgctgtgcagGTGCGTGCGGTGCGCGGCGTGTTGGACGAGCTGGGGCCGCAGCAGCTGACGTACGAGACCAACGCACTCAACCAGACGGCGGTGCAGCGGCGCGAGGTGC
                             tgtattt  TA-rich tract