Sequence
atgc intronic sequence ATGC exonic sequenceGTTCAGCAGCTGGAGCAGCAGCTAAACTCGAAGACGGAGGACCTGAAGGCCAAGCAGgtaggaccgcaagaggcccgattccgctcaaagaaacctcccgtaccagccagattcacttggaatcccgcttcacgcgttctcggggggggggggggcg...
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP06250 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8828252|gb|BE211982.1|BE211982EST: AGCTGGAGCAGCAGCTAAACTCGAAGACGGAGGACCTGAAGGCCAAGCAG ACTGACCTGGCGGCGGCGCACCAACGGCTGGCTGAGCTGAAGAACGAGGCG
genomic: AGCTGGAGCAGCAGCTAAACTCGAAGACGGAGGACCTGAAGGCCAAGCAGgtaggaccgc ... gccgctgcagACTGACCTGGCGGCGGCGCACCAACGGCTGGCTGAGCTGAAGAACGAGGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCAGCAGCTGGAGCAGCAGCTAAACTCGAAGACGGAGGACCTGAAGGCCAAGCAGgtaggaccgcaagaggcccgattccgctcaaagaaacctcccgtaccagccagattcacttggaatcccgcttcacgcgttctcggggggggggggggcg
- - - - GCTGGA
- - - - - GGAGCA
- - - - - - GAGCAG
- - - - - - - - GCAGCT
- - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa