1 5' 3' | 2 5' 3' |
CGGAGCGGAAGAGCGTATCGCCGAGCTGCAGCTGGCGGAGCAGCAGAGCTTTAAGGCGATTAAGGACCTCGAGCTCAAGCTCGATGCGGCTCGTAAGCAGgtgggtgacgcgagcgtggcatcgcttgcccaccatcacggctttacgcggcgtcgttgccgccgacgcgacgcactgcacgcttacatttagaacaagg...
species | Chlamydomonas reinhardtii |
transcript | EDP06250 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTAAGGCGATTAAGGACCTCGAGCTCAAGCTCGATGCGGCTCGTAAGCAG GTTCAGCAGCTGGAGCAGCAGCTAAACTCGAAGACGGAGGACCTGAAGGCCEST: gi|16437487|gb|BM002707.1|BM002707
genomic: TTAAGGCGATTAAGGACCTCGAGCTCAAGCTCGATGCGGCTCGTAAGCAGgtgggtgacg ... ttgcacacagGTTCAGCAGCTGGAGCAGCAGCTAAACTCGAAGACGGAGGACCTGAAGGCC
EST: TAAGGCGATTAAGGACCTCGAGCTCAAGCTCGATGCGGCTCGTAAGCAAG GTTCAGCATCTGGA
genomic: TAAGGCGATTAAGGACCTCGAGCTCAAGCTCGATGCGGCTCGTAAGCA-Ggtgggtgacg ... ttgcacacagGTTCAGCAGCTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAGCGGAAGAGCGTATCGCCGAGCTGCAGCTGGCGGAGCAGCAGAGCTTTAAGGCGATTAAGGACCTCGAGCTCAAGCTCGATGCGGCTCGTAAGCAGgtgggtgacgcgagcgtggcatcgcttgcccaccatcacggctttacgcggcgtcgttgccgccgacgcgacgcactgcacgcttacatttagaacaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtcgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acattta