1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGTTTGACTTCAAGAACTTTGTGACGGCCTCCATGACTGTGGGCCCCGCCTCGGGCGTGCTCAAGgtgaggcaggggggccgggcacgggggccggggtggtgttacaggcaggggggcagcggcgggggaggggggggaagaagtgcggaaggaggtggttgtg...
species | Chlamydomonas reinhardtii |
transcript | EDP05906 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTTTGTGACGGCCTCCATGACTGTGGGCCCCGCCTCGGGCGTGCTCAAG GGCCGCA-CCCGGAGGAGTGGAAGEST: gi|14238276|gb|BG857092.1|BG857092
genomic: ACTTTGTGACGGCCTCCATGACTGTGGGCCCCGCCTCGGGCGTGCTCAAGgtgaggcagg ... gttcgcgcagGGCCGCAACCCGGAGGAGTGGAAG
EST: ACTTTGTGACGGCCTCCATGACTGTGGGCCCCGCCTCGGGCGTGCTCAAG GGCCGCA-CCCGGAGGAGTGGAAGCCGCGGGAGGTGGCCCTGACCGTGCTGEST: gi|14235843|gb|BG854659.1|BG854659
genomic: ACTTTGTGACGGCCTCCATGACTGTGGGCCCCGCCTCGGGCGTGCTCAAGgtgaggcagg ... gttcgcgcagGGCCGCAACCCGGAGGAGTGGAAGCCGCGGGAGGTGGCCCTGACCGTGCTG
EST: ACTTTGTGACGGCCTCCATGACTGTGGGCCCCGCCTCGGGCGTGCTCAAG GGCCGCA-CCCGGAGGAGTGGAAGCCGCGGGAGGTGGCCCTGACCGTGCTG
genomic: ACTTTGTGACGGCCTCCATGACTGTGGGCCCCGCCTCGGGCGTGCTCAAGgtgaggcagg ... gttcgcgcagGGCCGCAACCCGGAGGAGTGGAAGCCGCGGGAGGTGGCCCTGACCGTGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTTGACTTCAAGAACTTTGTGACGGCCTCCATGACTGTGGGCCCCGCCTCGGGCGTGCTCAAGgtgaggcaggggggccgggcacgggggccggggtggtgttacaggcaggggggcagcggcgggggaggggggggaagaagtgcggaaggaggtggttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgt