1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tattagggcgccacagggggcccctgcagatgggatgcccaccaaagtgccgtgccagtgccttgatcgtgtgggccttttcaccaatgcaaccgcgcagGCCAACCTCTCTATCCTGCTGAACCGCAACAAGCAATGAGCGGTATGCTGGCGACTGTGCGGTAGCTTGCCACCGCGCAGGAGGAGCAGAGGCGCAGCGG
species | Chlamydomonas reinhardtii |
transcript | EDP05902 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGTGGGACCCCACGCGCGAGGGCAGCGCCATGGGCTGGTCGGAGATGCAG GCCAACCTCTCTATCCTGCTG
genomic: CGTGGGACCCCACGCGCGAGGGCAGCGCCATGGGCTGGTCGGAGATGCAGgtgcgcgggg ... aaccgcgcagGCCAACCTCTCTATCCTGCTG
agtgccgtgccagtgccttgatcgtgtgggccttttcaccaatgcaaccgcgcagGCCAACCTCTCTATCCTGCTGAACCGCAACAAGCAATGAGCGGTATGCTGGCGACTGTGCGGTAGCTTGCCACCGCGCAGGAGGAGCAGAGGCGCAGCGG
ccttgat putative branch site (score: 5)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattagggcgccacagggggcccctgcagatgggatgcccaccaaagtgccgtgccagtgccttgatcgtgtgggccttttcaccaatgcaaccgcgcagGCCAACCTCTCTATCCTGCTGAACCGCAACAAGCAATGAGCGGTATGCTGGCGACTGTGCGGTAGCTTGCCACCGCGCAGGAGGAGCAGAGGCGCAGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - cgccaca
- - - - - - - - - - - - - - - - - atgccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtggg