1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cctcgtgtgccgccccgctccatctgtagcccaccgtaccaggcatagcagctcgcagccgcatagcccttactacaacccccctccctttggttcccagGTTCTGACGTTCGGCGGCGGCCTGTTCGGCATCACGTACGGCGCTCTGTCGGCGTCGTGGGACCCCACGCGCGAGGGCAGCGCCATGGGCTGGTCGGAGA
species | Chlamydomonas reinhardtii |
transcript | EDP05902 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGGTGATGGATATCGAGTACCCGCTGTGGATTGTCTACGTGTCCCAA GTTCTGACGTTCGGCGGCGGCCTGTTCGGCATCACGTACGGAGCTCTGTCGEST: gi|10790496|gb|AV627862.1|AV627862
genomic: GTGGTGATGGATATCGAGTACCCGCTGTGGATTGTCTACGTGTCCCAAgtgagcccgg ... tggttcccagGTTCTGACGTTCGGCGGCGGCCTGTTCGGCATCACGTACGGCGCTCTGTCG
EST: GTGGTGATGGATATCGAGTACCCGCTGTGGATTGTCTACGTGTCCCAA GTTCTGACGTTCGGCGGCGGCCTGTTCGGCATCACGTACGGCGCTCTGTCGEST: gi|9210459|gb|BE337374.1|BE337374
genomic: GTGGTGATGGATATCGAGTACCCGCTGTGGATTGTCTACGTGTCCCAAgtgagcccgg ... tggttcccagGTTCTGACGTTCGGCGGCGGCCTGTTCGGCATCACGTACGGCGCTCTGTCG
EST: GTGGTGATGGATATCGAGTACCCGCTGTGGATTGTCTACGTGTCCCAA GTTCTGACGTTCGGCGGCGGCCTGTTCGGCATCACGTACGGCGCTCTGTCG
genomic: GTGGTGATGGATATCGAGTACCCGCTGTGGATTGTCTACGTGTCCCAAgtgagcccgg ... tggttcccagGTTCTGACGTTCGGCGGCGGCCTGTTCGGCATCACGTACGGCGCTCTGTCG
tagcagctcgcagccgcatagcccttactacaacccccctccctttggttcccagGTTCTGACGTTCGGCGGCGGCCTGTTCGGCATCACGTACGGCGCTCTGTCGGCGTCGTGGGACCCCACGCGCGAGGGCAGCGCCATGGGCTGGTCGGAGA
cccttac putative branch site (score: 3)
cccccctccctttggt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctcgtgtgccgccccgctccatctgtagcccaccgtaccaggcatagcagctcgcagccgcatagcccttactacaacccccctccctttggttcccagGTTCTGACGTTCGGCGGCGGCCTGTTCGGCATCACGTACGGCGCTCTGTCGGCGTCGTGGGACCCCACGCGCGAGGGCAGCGCCATGGGCTGGTCGGAGA
- -cgtgtgc
- - - - - - - - - - -atctgta
- - - - - - - - - - - - - - - - - - - - aggcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - agccgca