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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgagccacgctacgctcgtgcaccaacgggccggcagcaaccagggtttgtctgggcgtggcgcgcacccatgtcgcattgcgccggtggctgtgccttcattatactcataattactgtgacaagccagcgtctgaacaaaagctgtgcgcacgccgcgctcgcagATCTCCACTGTAAACATGGGCCTGGCTGTGGGCTGGTCGTGTGTGGTGCTGTCATTCGGGCGCAAGGGCTGGCGGAAAAGCCTGCCACACTCGCTAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05878
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14237536|gb|BG856352.1|BG856352
EST:     ACAGTGAGGGTGTGGCCCTGACCTCGACCATGGGCTTCATCAAGAACCCG                         ATCTCCACTGTAAACATGGGCCTGGCTGTGGGCTGGTCGTGTGTGGTGCTG
genomic: ACAGTGAGGGTGTGGCCCTGACCTCGACCATGGGCTTCATCAAGAACCCGgtgagcgagc ... gcgctcgcagATCTCCACTGTAAACATGGGCCTGGCTGTGGGCTGGTCGTGTGTGGTGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attactgtgacaagccagcgtctgaacaaaagctgtgcgcacgccgcgctcgcagATCTCCACTGTAAACATGGGCCTGGCTGTGGGCTGGTCGTGTGTGGTGCTGTCATTCGGGCGCAAGGGCTGGCGGAAAAGCCTGCCACACTCGCTAG
                        aacaaaa  TA-rich tract