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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCAGCTCCGCAAACCCGGCCTACGATGCGAGCGGAAAGCTCCTCTTCACATCGGCACTGGAGTGCATCTCGGTGTGGAACGCCAAGCAGGGCAGCCTGgtgcgtcctaagttggcggcatgttaggtctcgtgaggaggaagcagaccatgggttcaagtgtttcggtatgaagttggggggtgcgcagcgcaagagg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP05821
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6551080|gb|AV396864.1|AV396864
EST:     CATCGGCACTGGAGTGCATCTCGGTGTGGAACGCCAAGCAGGGCAGCCTG                         GTCCGCACGCTGAGCCCGGTCGTGGCCAGCAGCAGCGGCGGCAGTGGCTCC
genomic: CATCGGCACTGGAGTGCATCTCGGTGTGGAACGCCAAGCAGGGCAGCCTGgtgcgtccta ... atggcatcagGTCCGCACGCTGAGCCCGGTCGTGGCCAGCAGCAGCGGCGGCAGTGGCTCC
EST: gi|10785774|gb|AV642446.1|AV642446
EST:     CATCGGCACTGGAGTGCATCTCGGTGTGGAACGCCAAGCAGGGCAGCCTG                         GTCCGAACGCTGAGCCCGGTCGTGGACAGAAGCAGCGGCGGCAGTGGCTCC
genomic: CATCGGCACTGGAGTGCATCTCGGTGTGGAACGCCAAGCAGGGCAGCCTGgtgcgtccta ... atggcatcagGTCCGCACGCTGAGCCCGGTCGTGGCCAGCAGCAGCGGCGGCAGTGGCTCC
EST: gi|6551427|gb|AV397211.1|AV397211
EST:     CATCGGCACTGGAGTGCATCTCGGAGTGGAACGCCAAGCAGGGCAGCCTG                         GTCCGCACGCTGAGCCCGGTCGTGGCCAGCAGCAGCG
genomic: CATCGGCACTGGAGTGCATCTCGGTGTGGAACGCCAAGCAGGGCAGCCTGgtgcgtccta ... atggcatcagGTCCGCACGCTGAGCCCGGTCGTGGCCAGCAGCAGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGCAGCTCCGCAAACCCGGCCTACGATGCGAGCGGAAAGCTCCTCTTCACATCGGCACTGGAGTGCATCTCGGTGTGGAACGCCAAGCAGGGCAGCCTGgtgcgtcctaagttggcggcatgttaggtctcgtgaggaggaagcagaccatgggttcaagtgtttcggtatgaagttggggggtgcgcagcgcaagagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taggtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcggt