1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...agtgggaaagcgtgggctgtcccgtggcaggtcactcccgcgcgacatgctagagccaatgcagacgactcacacgttgatgctccctgcatggcatcagGTCCGCACGCTGAGCCCGGTCGTGGCCAGCAGCAGCGGCGGCAGTGGCTCCAGCGCGGCGGTGGCGGAGGTGACGGTCATGACCTGCGCGCCAACCGGCA
species | Chlamydomonas reinhardtii |
transcript | EDP05821 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATCGGCACTGGAGTGCATCTCGGTGTGGAACGCCAAGCAGGGCAGCCTG GTCCGCACGCTGAGCCCGGTCGTGGCCAGCAGCAGCGGCGGCAGTGGCTCCEST: gi|10785774|gb|AV642446.1|AV642446
genomic: CATCGGCACTGGAGTGCATCTCGGTGTGGAACGCCAAGCAGGGCAGCCTGgtgcgtccta ... atggcatcagGTCCGCACGCTGAGCCCGGTCGTGGCCAGCAGCAGCGGCGGCAGTGGCTCC
EST: CATCGGCACTGGAGTGCATCTCGGTGTGGAACGCCAAGCAGGGCAGCCTG GTCCGAACGCTGAGCCCGGTCGTGGACAGAAGCAGCGGCGGCAGTGGCTCCEST: gi|6551427|gb|AV397211.1|AV397211
genomic: CATCGGCACTGGAGTGCATCTCGGTGTGGAACGCCAAGCAGGGCAGCCTGgtgcgtccta ... atggcatcagGTCCGCACGCTGAGCCCGGTCGTGGCCAGCAGCAGCGGCGGCAGTGGCTCC
EST: CATCGGCACTGGAGTGCATCTCGGAGTGGAACGCCAAGCAGGGCAGCCTG GTCCGCACGCTGAGCCCGGTCGTGGCCAGCAGCAGCG
genomic: CATCGGCACTGGAGTGCATCTCGGTGTGGAACGCCAAGCAGGGCAGCCTGgtgcgtccta ... atggcatcagGTCCGCACGCTGAGCCCGGTCGTGGCCAGCAGCAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgggaaagcgtgggctgtcccgtggcaggtcactcccgcgcgacatgctagagccaatgcagacgactcacacgttgatgctccctgcatggcatcagGTCCGCACGCTGAGCCCGGTCGTGGCCAGCAGCAGCGGCGGCAGTGGCTCCAGCGCGGCGGTGGCGGAGGTGACGGTCATGACCTGCGCGCCAACCGGCA
- - - - - - - - - - - - - - - -tcactcc
- - - - - - - - - - - - - - - - - - - - - - acatgct
- - - - - - - - - - - - - - - - - - - - - - - - - -agagcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actcaca