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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGAGGCGTTCAACCAGTGCTGTCGGGGGAAGAATTTTGCGCAGCTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATAgtgagtcattgcgcggcctggccaggtgctgatgtgctggccggcgtgccttgcgacgtgcatatgcgcttccgtccctccctccgcgcgcatcgccctccagggattgaccgcctccatgttcttgctcattcttaatcctacacccccattccacctcccaaacccccgcttacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP05799
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6542600|gb|AV388384.1|AV388384
EST:     CTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATA                         CATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGG
genomic: CTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATAgtgagtcatt ... ccgcttacagCATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGG
EST: gi|10773294|gb|AV624117.1|AV624117
EST:     CTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATA                         CATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGG
genomic: CTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATAgtgagtcatt ... ccgcttacagCATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGG
EST: gi|6545315|gb|AV391099.1|AV391099
EST:     CTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATA                         CATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGG
genomic: CTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATAgtgagtcatt ... ccgcttacagCATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGG
EST: gi|16071534|gb|BI873530.1|BI873530
EST:     CTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATA                         CATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGG
genomic: CTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATAgtgagtcatt ... ccgcttacagCATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGG