Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6542600|gb|AV388384.1|AV388384EST: CTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATA CATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGG
genomic: CTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATAgtgagtcatt ... ccgcttacagCATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGG
EST:
gi|10773294|gb|AV624117.1|AV624117EST: CTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATA CATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGG
genomic: CTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATAgtgagtcatt ... ccgcttacagCATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGG
EST:
gi|6545315|gb|AV391099.1|AV391099EST: CTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATA CATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGG
genomic: CTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATAgtgagtcatt ... ccgcttacagCATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGG
EST:
gi|16071534|gb|BI873530.1|BI873530EST: CTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATA CATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGG
genomic: CTGATGTGCAAGGGGAAATACGACGCCTCGCAGGAGTGCATGCACCGATAgtgagtcatt ... ccgcttacagCATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttgctcattcttaatcctacacccccattccacctcccaaacccccgcttacagCATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGGGCGGCCGCACAAGCCGGACTGGTCGGTGCTGCTGGCGGGCATTGAGGAG
tcttaat putative branch site (score: 3)
cccccgctt putative PPT
attcttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtcattgcgcggcctggccaggtgctgatgtgctggccggcgtgccttgcgacgtgcatatgcgcttccgtccctccctccgcgcgcatcgccctccagggattgaccgcctccatgttcttgctcattcttaatcctacacccccattccacctcccaaacccccgcttacagCATGAATGACGACAACGCTGAGCTGGTGGCCAAGCGCTGGGTGGAGCTGGGGCGGCCGCACAAGCCGGACTGGTCGGTGCTGCTGGCGGGCATTGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG