1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagggcggctgggtgcgcatgtttagtgccagggttgggggccggtgaccatggggtgcggtctggtgcgcgttctgagttcaattggcgggggttgcgtccaactcccggtgtaggccacctgagagcacccagttgatgcagaggacatgactgaacatttctctggcgacgcgcaacacagGTGGCATCCCGCGCATGGGTAAGGCGGCCGTGGACTTCGCGGAATGCACCATGGCTTGCGCACGCTACGCTACCAATTTTCCCGATTCGGAGCATATGAT
species | Chlamydomonas reinhardtii |
transcript | EDP05759 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGGGAGCATCCTGGACTGGAGGACCCATACAACAAGCAGTGTGACCAGC GTGGCATCCCGCGCATGGGTAAGGCGGCCGTGGACTTCGCGGAATGCACCAEST: gi|49466146|gb|BP094059.1|BP094059
genomic: CTGGGAGCATCCTGGACTGGAGGACCCATACAACAAGCAGTGTGACCAGCgtaagggcgg ... cgcaacacagGTGGCATCCCGCGCATGGGTAAGGCGGCCGTGGACTTCGCGGAATGCACCA
EST: CTGGGAGCATCCTGGACTGGAGGACCCATACAACAAGCAGTGTGACCAGC GTGGCATCCCGCGCATGGGTAAGGCGGCCGTGGACTTCGCGGAATGCACCA
genomic: CTGGGAGCATCCTGGACTGGAGGACCCATACAACAAGCAGTGTGACCAGCgtaagggcgg ... cgcaacacagGTGGCATCCCGCGCATGGGTAAGGCGGCCGTGGACTTCGCGGAATGCACCA
acccagttgatgcagaggacatgactgaacatttctctggcgacgcgcaacacagGTGGCATCCCGCGCATGGGTAAGGCGGCCGTGGACTTCGCGGAATGCACCATGGCTTGCGCACGCTACGCTACCAATTTTCCCGATTCGGAGCATATGAT
agttgat putative branch site (score: 5)
aacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggcggctgggtgcgcatgtttagtgccagggttgggggccggtgaccatggggtgcggtctggtgcgcgttctgagttcaattggcgggggttgcgtccaactcccggtgtaggccacctgagagcacccagttgatgcagaggacatgactgaacatttctctggcgacgcgcaacacagGTGGCATCCCGCGCATGGGTAAGGCGGCCGTGGACTTCGCGGAATGCACCATGGCTTGCGCACGCTACGCTACCAATTTTCCCGATTCGGAGCATATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA