1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gctccgccccgcctcgtcataccacctctgcaccaccacacgctccaaacacacacggacacgcccacatgccgtacacacgcacacgttcaacccacagGGTCATGGCACGTTCTTTGCGGACAACGGCGACACGTACGAGGGCGAGTGGCTCAACGGGCGGCGGCACGGCAAGGGGCGGGCAGTGTACGGCGGGCGGC
species | Chlamydomonas reinhardtii |
transcript | EDP05720 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAAGTACGTGGTGCGCTACAACGGCGAGTGGCGGGCCGACCAGCCCACG GGTCATGGCACGTTCTTTGCGGACAACGGCGACACGTACGAGGGCGAGTGG
genomic: GCAAGTACGTGGTGCGCTACAACGGCGAGTGGCGGGCCGACCAGCCCACGgtgcgtacac ... caacccacagGGTCATGGCACGTTCTTTGCGGACAACGGCGACACGTACGAGGGCGAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctccgccccgcctcgtcataccacctctgcaccaccacacgctccaaacacacacggacacgcccacatgccgtacacacgcacacgttcaacccacagGGTCATGGCACGTTCTTTGCGGACAACGGCGACACGTACGAGGGCGAGTGGCTCAACGGGCGGCGGCACGGCAAGGGGCGGGCAGTGTACGGCGGGCGGC
- - - - - - - - tcatacc
- - - - - - - - - - - - - - - - - - cacacgc
- - - - - - - - - - - - - - - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - acacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacacgt