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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgctctcgcctatgtgacatcgtcgttacataagcagtttcgggcgtgggccagcattcgggttccaaatgccatgccattttccagctgaacgcacacgctgtttgctgtgcgtctgcagGCAAGGGCACGGTCATTTATAAGAACAGTGATAAGTATGAAGGCGACTGGGCGAACGACATGCGGCACGGGTTAGGGACGCTCTGGCTCTACCGCGACGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05720
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6542505|gb|AV388289.1|AV388289
EST:     GACGACGGGCGAGCGATATCAGGGCTCGTGGAAGGACAACAAGAAGCACG                         GCAAGGGCACGGTCATTTATAAGAACAGTGATAAGTATGAAGGCGACTGGG
genomic: GACGACGGGCGAGCGATATCAGGGCTCGTGGAAGGACAACAAGAAGCACGgtgcgctctc ... gcgtctgcagGCAAGGGCACGGTCATTTATAAGAACAGTGATAAGTATGAAGGCGACTGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgccatgccattttccagctgaacgcacacgctgtttgctgtgcgtctgcagGCAAGGGCACGGTCATTTATAAGAACAGTGATAAGTATGAAGGCGACTGGGCGAACGACATGCGGCACGGGTTAGGGACGCTCTGGCTCTACCGCGACGG
            atttt  TA-rich tract