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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCCCGCGGTGCGCTCGCTCATGAACGTGCCCTTCACCATCCCCTCCTCGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATGgtaagccgcgccgtggtgtaggcggtcgcgaagcctgaagggcagatggctggggttgtcatgcggatggggatgtgggccgggaggggaatggggtggt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP05686
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22064173|gb|BQ815659.1|BQ815659
EST:     CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATG                         CTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
genomic: CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATGgtaagccgcg ... gcccctgcagCTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
EST: gi|161807147|gb|FC089342.1|FC089342
EST:     CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATG                         CTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
genomic: CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATGgtaagccgcg ... gcccctgcagCTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
EST: gi|161811994|gb|FC096184.1|FC096184
EST:     CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATG                         CTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
genomic: CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATGgtaagccgcg ... gcccctgcagCTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
EST: gi|14232886|gb|BG851702.1|BG851702
EST:     CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATG                         CTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
genomic: CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATGgtaagccgcg ... gcccctgcagCTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
EST: gi|161803775|gb|FC093521.1|FC093521
EST:     CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATG                         CTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
genomic: CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATGgtaagccgcg ... gcccctgcagCTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
EST: gi|161817443|gb|FC101656.1|FC101656
EST:     CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATG                         CTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
genomic: CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATGgtaagccgcg ... gcccctgcagCTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
EST: gi|16436820|gb|BM002040.1|BM002040
EST:     CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATG                         CTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
genomic: CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATGgtaagccgcg ... gcccctgcagCTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
EST: gi|161805648|gb|FC093616.1|FC093616
EST:     CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATG                         CTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
genomic: CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATGgtaagccgcg ... gcccctgcagCTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
EST: gi|14233751|gb|BG852567.1|BG852567
EST:     CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATG                         CTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
genomic: CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATGgtaagccgcg ... gcccctgcagCTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
EST: gi|7687393|gb|AW758041.1|AW758041
EST:     CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATG                         CTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
genomic: CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATGgtaagccgcg ... gcccctgcagCTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
EST: gi|161819271|gb|FC109321.1|FC109321
EST:     CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATG                         CTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC
genomic: CGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATGgtaagccgcg ... gcccctgcagCTCCAACTCAAGGGCCACCGCTCCGTGGGCGGCATGCGCGCCTCCATCTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACCCCGCGGTGCGCTCGCTCATGAACGTGCCCTTCACCATCCCCTCCTCGCCCGACCTGGAGAAGCAGTTCATCAAGGAGGCCGAGAAGGCCGGCATGgtaagccgcgccgtggtgtaggcggtcgcgaagcctgaagggcagatggctggggttgtcatgcggatggggatgtgggccgggaggggaatggggtggt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgggc