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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttggtctgcgccgcgccgcctccacacacgctgcatctcactcagccgcactgccctgccctctgcgcccgtgcgccctttctcccttcgcccgcgcagGCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCGCCGGCTACATCTATATCCGCTGGCGCGGTATTAGCGTGTCGGACTTCTT

Basic information

species Chlamydomonas reinhardtii
transcript EDP04622
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15695887|gb|BI720192.1|BI720192
EST:     GTCATCCACACCG                         GCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
genomic: GTCATCCACACCGgtacgcgcgc ... gcccgcgcagGCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
EST: gi|15691801|gb|BI716106.1|BI716106
EST:     CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCG                         GCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
genomic: CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCGgtacgcgcgc ... gcccgcgcagGCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
EST: gi|23361012|gb|BU648832.1|BU648832
EST:     CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCG                         GCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
genomic: CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCGgtacgcgcgc ... gcccgcgcagGCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
EST: gi|22076502|gb|BQ825278.1|BQ825278
EST:     CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCG                         GCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
genomic: CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCGgtacgcgcgc ... gcccgcgcagGCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
EST: gi|15698196|gb|BI722501.1|BI722501
EST:     CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCG                         GCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
genomic: CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCGgtacgcgcgc ... gcccgcgcagGCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
EST: gi|22048721|gb|BQ808345.1|BQ808345
EST:     CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCG                         GCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
genomic: CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCGgtacgcgcgc ... gcccgcgcagGCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
EST: gi|15694100|gb|BI718405.1|BI718405
EST:     CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCG                         GCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
genomic: CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCGgtacgcgcgc ... gcccgcgcagGCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
EST: gi|15701008|gb|BI725313.1|BI725313
EST:     CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCG                         GCCGCGGCGGTTGGTCGGTGC
genomic: CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCGgtacgcgcgc ... gcccgcgcagGCCGCGGCGGTTGGTCGGTGC
EST: gi|23360242|gb|BU648062.1|BU648062
EST:     CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCG                         GCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
genomic: CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCGgtacgcgcgc ... gcccgcgcagGCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
EST: gi|15699673|gb|BI723978.1|BI723978
EST:     CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCG                         GCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
genomic: CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCGgtacgcgcgc ... gcccgcgcagGCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
EST: gi|16437879|gb|BM003099.1|BM003099
EST:     GTCATCCACACCG                         GCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
genomic: GTCATCCACACCGgtacgcgcgc ... gcccgcgcagGCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
EST: gi|15701009|gb|BI725314.1|BI725314
EST:     CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCG                         GCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
genomic: CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCGgtacgcgcgc ... gcccgcgcagGCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
EST: gi|15697341|gb|BI721646.1|BI721646
EST:     CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCG                         GCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG
genomic: CGTGGTCCGGGGCCAGAAAGGCGGCCAAGGATACACCGTCATCCACACCGgtacgcgcgc ... gcccgcgcagGCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccgcactgccctgccctctgcgcccgtgcgccctttctcccttcgcccgcgcagGCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCGCCGGCTACATCTATATCCGCTGGCGCGGTATTAGCGTGTCGGACTTCTT
                           tgcgccctttctccct  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttggtctgcgccgcgccgcctccacacacgctgcatctcactcagccgcactgccctgccctctgcgcccgtgcgccctttctcccttcgcccgcgcagGCCGCGGCGGTTGGTCGGTGCTCATCCTGCCCACGGCGCTGGCCGCCGGCGCCGGCTACATCTATATCCGCTGGCGCGGTATTAGCGTGTCGGACTTCTT

- - - - - - - - - - - - acacacg
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