1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttgcttgtgccgctggctggtaaggctcggcgacagccgcagctgccgctgctcgtacatgtgtggacgtggtcactgacgcgtgtcctgaccacacagGGGTCACGGCCGCACACGGTCGGGAAAGGGGCAGCGGACCAGAAGAAGAAGCGCGGGCGGAAGAAGGACGAGTCGACGGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP04619 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGAGGGTGACGAGACGGCCTGCGAAAAGCTGGGCATAGAGGCGCCGCAG GGGTCACGGCCGCACACGGTCGGGAAAGGGGCAGCEST: gi|23366786|gb|BU654605.1|BU654605
genomic: TGGAGGGTGACGAGACGGCCTGCGAAAAGCTGGGCATAGAGGCGCCGCAGgtgtgttggc ... gaccacacagGGGTCACGGCCGCACACGGTCGGGAAAGGGGCAGC
EST: TGGAGGGTGACGAGACGGCCTGCGAAAAGCTGGGCATAGAGGCGCCGCAG GGGTCACGGCCGCACACGGTCGGGAAAGGGGCAGC
genomic: TGGAGGGTGACGAGACGGCCTGCGAAAAGCTGGGCATAGAGGCGCCGCAGgtgtgttggc ... gaccacacagGGGTCACGGCCGCACACGGTCGGGAAAGGGGCAGC
gccgctgctcgtacatgtgtggacgtggtcactgacgcgtgtcctgaccacacagGGGTCACGGCCGCACACGGTCGGGAAAGGGGCAGCGGACCAGAAGAAGAAGCGCGGGCGGAAGAAGGACGAGTCGACGGCAG
tcctgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgcttgtgccgctggctggtaaggctcggcgacagccgcagctgccgctgctcgtacatgtgtggacgtggtcactgacgcgtgtcctgaccacacagGGGTCACGGCCGCACACGGTCGGGAAAGGGGCAGCGGACCAGAAGAAGAAGCGCGGGCGGAAGAAGGACGAGTCGACGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- tgcttgt
- - - - - - - - - - - - - - - - - -agccgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcgtaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcactga