1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagttcagtgtgtgacgcgcggcaacagcagaggtttgcgcaggactcctgagaagtcgggttgtttcgcgagctcttgggctgcccgggccccaggtgcctgggttgttgtggctgcaccctattaattgttgccttggcctccgcgcagTGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCACGCTGACCTCCCCACCTCGGCCAGCAAGCGCGTGGGCAGCACCGGCAGC
species | Chlamydomonas reinhardtii |
transcript | EDP04606 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGAACAACTTCTTTGGTGGCAGTCAGGACAACATTGCGTCCATAGA TGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCAEST: gi|15695425|gb|BI719730.1|BI719730
genomic: AAGAAGAACAACTTCTTTGGTGGCAGTCAGGACAACATTGCGTCCATAGAgtgagttcag ... ctccgcgcagTGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCA
EST: AAGAAGAACAACTTCTTTGGTGGCAGTCAGGACAACATTGCGTCCATAGA TGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCAEST: gi|23363675|gb|BU651495.1|BU651495
genomic: AAGAAGAACAACTTCTTTGGTGGCAGTCAGGACAACATTGCGTCCATAGAgtgagttcag ... ctccgcgcagTGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCA
EST: CAACATTGCGTCCATAGA TGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCAEST: gi|22073858|gb|BQ823196.1|BQ823196
genomic: CAACATTGCGTCCATAGAgtgagttcag ... ctccgcgcagTGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCA
EST: AAGAAGAACAACTTCTTTGGTGGCAGTCAGGACAACATTGCGTCCATAGA TGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCAEST: gi|10789600|gb|AV626965.1|AV626965
genomic: AAGAAGAACAACTTCTTTGGTGGCAGTCAGGACAACATTGCGTCCATAGAgtgagttcag ... ctccgcgcagTGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCA
EST: AAGAAGAACAACTTCTTTGGTGGCAGTCAGGACAACATTGCGTCCATAGA TGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCAEST: gi|22059220|gb|BQ813321.1|BQ813321
genomic: AAGAAGAACAACTTCTTTGGTGGCAGTCAGGACAACATTGCGTCCATAGAgtgagttcag ... ctccgcgcagTGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCA
EST: AAGAAGAACAACTTCTTTGGTGGCAGTCAGGACAACATTGCGTCCATAGA TGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCAEST: gi|8828349|gb|BE212079.1|BE212079
genomic: AAGAAGAACAACTTCTTTGGTGGCAGTCAGGACAACATTGCGTCCATAGAgtgagttcag ... ctccgcgcagTGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCA
EST: AAGAAGAACAACTTCTTTGGTGGCAGTCAGGACAACATTGCGTCCATAGA TGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCAEST: gi|15371317|gb|BI530743.1|BI530743
genomic: AAGAAGAACAACTTCTTTGGTGGCAGTCAGGACAACATTGCGTCCATAGAgtgagttcag ... ctccgcgcagTGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCA
EST: AAGAAGAACAACTTCTTTGGTGGCAGTCAGGACAACATTGCGTCCATAGA TGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCA
genomic: AAGAAGAACAACTTCTTTGGTGGCAGTCAGGACAACATTGCGTCCATAGAgtgagttcag ... ctccgcgcagTGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCA
gtgcctgggttgttgtggctgcaccctattaattgttgccttggcctccgcgcagTGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCACGCTGACCTCCCCACCTCGGCCAGCAAGCGCGTGGGCAGCACCGGCAGC
tattaat putative branch site (score: 2)
cctccgc putative PPT
tattaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcagtgtgtgacgcgcggcaacagcagaggtttgcgcaggactcctgagaagtcgggttgtttcgcgagctcttgggctgcccgggccccaggtgcctgggttgttgtggctgcaccctattaattgttgccttggcctccgcgcagTGTCACGCCGCGGTCACGCGACGCGGGCAACGGAGCGTCCTCCTGGGCGCACGCTGACCTCCCCACCTCGGCCAGCAAGCGCGTGGGCAGCACCGGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG