1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGCGTGGCGGCGTTTGTGCGCAACGCCTTCGAGGAGGCGCTCAGCGGCATCCTCAACAAGCGCTCCGTGGACGTGCTGCTAGACATTAAGAAGAGCCAGGtgcgcggcggtggtggggcatagggtgtgtctgcggtattgttggcgggcggcggcggtcgacatttgagcagcgaagtcactgcgcggggcaatggtgg...
species | Chlamydomonas reinhardtii |
transcript | EDP04571 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCTCAACAAGCGCTCCGTGGACGTGCTGCTAGACATTAAGAAGAGCCAGG CGCGCGGCAAGCCGTACGTGATCGTGTTCTGCGGCGTCAACGGCGTGGGCAEST: gi|22075759|gb|BQ824535.1|BQ824535
genomic: CCTCAACAAGCGCTCCGTGGACGTGCTGCTAGACATTAAGAAGAGCCAGGtgcgcggcgg ... tgtctccaggCGCGCGGCAAGCCGTACGTGATCGTGTTCTGCGGCGTCAACGGCGTGGGCA
EST: CCTCAACAAGCGCTCCGTGGACGTGCTGCTAGACATTAAGAAGAGCCAGG CGCGCGGCAAGCCGTACTTGATCGTGTTCTGCGGCGTCAACGGCGTGGGCA
genomic: CCTCAACAAGCGCTCCGTGGACGTGCTGCTAGACATTAAGAAGAGCCAGGtgcgcggcgg ... tgtctccaggCGCGCGGCAAGCCGTACGTGATCGTGTTCTGCGGCGTCAACGGCGTGGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGTGGCGGCGTTTGTGCGCAACGCCTTCGAGGAGGCGCTCAGCGGCATCCTCAACAAGCGCTCCGTGGACGTGCTGCTAGACATTAAGAAGAGCCAGGtgcgcggcggtggtggggcatagggtgtgtctgcggtattgttggcgggcggcggcggtcgacatttgagcagcgaagtcactgcgcggggcaatggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgagc