1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgtgctgatgtcagatcaaaggatggacacgcgctcaaacagggggctcgtttgctgcctctgctgcctctcaattgggcaagtggtctggtgtggtgcttttaccggccgtaacctttggcgttatggtgccttttgcgtggactgcccaacacagGGCACTGGCAGCCAGGCGGTGGGGGCCCAGGCCAAAAAGGGCACACAGGCAGGCAAGGACGCCAGCGGCGACGACGACGCCGGTGCTGCCCGCAAGGGCG
species | Chlamydomonas reinhardtii |
transcript | EDP04571 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGAACGCCAAGCAG GGCACTGGCAGCCAGGCGGTGGGGGCCCAGGCCAAAAAGGGCACACAGGCAEST: gi|49467930|gb|BP095791.1|BP095791
genomic: GCGAACGCCAAGCAGgtgtgctgat ... cccaacacagGGCACTGGCAGCCAGGCGGTGGGGGCCCAGGCCAAAAAGGGCACACAGGCA
EST: CCAAGAAGCAGCCGGTGATGCGCAGCGGGCCTCCGGCGAACGCCAAGCAG GGCACTGGCAGCCAGGCGGTGGGGGCCCAGGCCAAAAAGGGCACACAGGCAEST: gi|10792817|gb|AV630183.1|AV630183
genomic: CCAAGAAGCAGCCGGTGATGCGCAGCGGGCCTCCGGCGAACGCCAAGCAGgtgtgctgat ... cccaacacagGGCACTGGCAGCCAGGCGGTGGGGGCCCAGGCCAAAAAGGGCACACAGGCA
EST: CCAAGAAGCAGCCGGTGATGCGCAGCGGGCCTCCGGCGAACGCCAAGCAG GGCACTGGCAGCCAGGCGGTGGGGGCCCAGGCCAAAAAGGGCACACAGGCA
genomic: CCAAGAAGCAGCCGGTGATGCGCAGCGGGCCTCCGGCGAACGCCAAGCAGgtgtgctgat ... cccaacacagGGCACTGGCAGCCAGGCGGTGGGGGCCCAGGCCAAAAAGGGCACACAGGCA
taccggccgtaacctttggcgttatggtgccttttgcgtggactgcccaacacagGGCACTGGCAGCCAGGCGGTGGGGGCCCAGGCCAAAAAGGGCACACAGGCAGGCAAGGACGCCAGCGGCGACGACGACGCCGGTGCTGCCCGCAAGGGCG
ccgtaac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgctgatgtcagatcaaaggatggacacgcgctcaaacagggggctcgtttgctgcctctgctgcctctcaattgggcaagtggtctggtgtggtgcttttaccggccgtaacctttggcgttatggtgccttttgcgtggactgcccaacacagGGCACTGGCAGCCAGGCGGTGGGGGCCCAGGCCAAAAAGGGCACACAGGCAGGCAAGGACGCCAGCGGCGACGACGACGCCGGTGCTGCCCGCAAGGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC