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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccgacttgtgcctggagcagctcatctgtagcttggtatgccgcctgttgcattatgtgtgctttttatgtttttcctgttgtgcatgtgcactgaacagATGGGCGACACCTGGCCTGGGTTGCCGTTCCGCTCATGGTACTGGCGCTGGTGGTCGACCGCGGCGTCAGCACTCTTGACGACATCAAGCAGTGCGCGAA

Basic information

species Chlamydomonas reinhardtii
transcript EDP04530
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6541855|gb|AV387639.1|AV387639
EST:     CCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTG                         ATGGGCGACACCTGGCCTGGGTTGCCGTTCCGCTCATGGTACTGGCGCTGG
genomic: CCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTGgtgagttggt ... cactgaacagATGGGCGACACCTGGCCTGGGTTGCCGTTCCGCTCATGGTACTGGCGCTGG
EST: gi|161815142|gb|FC105300.1|FC105300
EST:     CCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTG                         ATGGGCGACACCTGGCCTGGGTTGCCGTTCCGCTCATGGTACTGGCGCTGG
genomic: CCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTGgtgagttggt ... cactgaacagATGGGCGACACCTGGCCTGGGTTGCCGTTCCGCTCATGGTACTGGCGCTGG
EST: gi|10128160|gb|BE726864.1|BE726864
EST:     CCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTG                         ATGGGCGACACCTGGCCTGAGTTGCCGTTCCGCTCATGGTACTGGCGCTGG
genomic: CCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTGgtgagttggt ... cactgaacagATGGGCGACACCTGGCCTGGGTTGCCGTTCCGCTCATGGTACTGGCGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgcattatgtgtgctttttatgtttttcctgttgtgcatgtgcactgaacagATGGGCGACACCTGGCCTGGGTTGCCGTTCCGCTCATGGTACTGGCGCTGGTGGTCGACCGCGGCGTCAGCACTCTTGACGACATCAAGCAGTGCGCGAA
                 tttttatgttttt  TA-rich tract