1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ggtcggctgtggtggtatggcgctgccgtgctgagccaacgtccacatcaccgtctggtcttacccgcccccgtcgcccctaccacttgcctgcccgcagCATCCACCAGTTCGAGAAGGTGGAGCAGTTTGTGATCGCCAGCCCCGAGGGCAACGCCTCGTGGGAGGCCATGGAGGAGATGCTGGCAAACGCCGAGGAC
species | Chlamydomonas reinhardtii |
transcript | EDP04520 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCCGCAAGGAGGTGGGCAGCCACGGCCGCGACACGCTCGGCATCTTCCG CATCCACCAGTTCGAGAAGGTGGAGCAGTTTGTGATCGCCAGCCCCGAGGGEST: gi|10773615|gb|AV624438.1|AV624438
genomic: TTCCGCAAGGAGGTGGGCAGCCACGGCCGCGACACGCTCGGCATCTTCCGgtgaggcgga ... ctgcccgcagCATCCACCAGTTCGAGAAGGTGGAGCAGTTTGTGATCGCCAGCCCCGAGGG
EST: GCAAGGAGGTGGGCAGCCACGGCCGCGACACGCTCGGCATCTTCCG CATCCACCAGTTCGAGAAGGTGGAGCAGTTTGTGATCGCCAGCCCCGAGGG
genomic: GCAAGGAGGTGGGCAGCCACGGCCGCGACACGCTCGGCATCTTCCGgtgaggcgga ... ctgcccgcagCATCCACCAGTTCGAGAAGGTGGAGCAGTTTGTGATCGCCAGCCCCGAGGG
catcaccgtctggtcttacccgcccccgtcgcccctaccacttgcctgcccgcagCATCCACCAGTTCGAGAAGGTGGAGCAGTTTGTGATCGCCAGCCCCGAGGGCAACGCCTCGTGGGAGGCCATGGAGGAGATGCTGGCAAACGCCGAGGAC
gtcttac putative branch site (score: 3)
cttgcct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcggctgtggtggtatggcgctgccgtgctgagccaacgtccacatcaccgtctggtcttacccgcccccgtcgcccctaccacttgcctgcccgcagCATCCACCAGTTCGAGAAGGTGGAGCAGTTTGTGATCGCCAGCCCCGAGGGCAACGCCTCGTGGGAGGCCATGGAGGAGATGCTGGCAAACGCCGAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - tggtatg
- - - - - - - - - - - - - - - - - - - - gtccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacttgc