1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atcttaagccactcacctggtgcacctgcacagcgcacctacacacggcttggtccaagcacccaacattcctcaccgcccatgcccacgcggcccacagGGCAAGCTCGTGGACTTGCCCAAGTCCACCGCCACCTCTGGCGTCGCCACGCCCGCGCCCGAGGCTGCCTCCGCGTGAAGGGGCGGGCCCCCACAGCCGC
species | Chlamydomonas reinhardtii |
transcript | EDP04520 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCATGGCGGGCGTGGAGTTCATCCCCTTCCGCAAGACCTTCGACGCCAAG GGCAAGCTCGTGGACTTGCCCAAGTCCACCGCCACCTCEST: gi|22068503|gb|BQ818421.1|BQ818421
genomic: TCATGGCGGGCGTGGAGTTCATCCCCTTCCGCAAGACCTTCGACGCCAAGgtgggagggg ... cggcccacagGGCAAGCTCGTGGACTTGCCCAAGTCCACCGCCACCTC
EST: TCATGGCGGGCGTGGAGTTCATCCCCTTCCGCAAGACCTTCGACGCCAAG GGCAAGCTCGTGGACTTGCCCAAGTCCACCGCCACCTCTGGCGTCGCCACG
genomic: TCATGGCGGGCGTGGAGTTCATCCCCTTCCGCAAGACCTTCGACGCCAAGgtgggagggg ... cggcccacagGGCAAGCTCGTGGACTTGCCCAAGTCCACCGCCACCTCTGGCGTCGCCACG
cggcttggtccaagcacccaacattcctcaccgcccatgcccacgcggcccacagGGCAAGCTCGTGGACTTGCCCAAGTCCACCGCCACCTCTGGCGTCGCCACGCCCGCGCCCGAGGCTGCCTCCGCGTGAAGGGGCGGGCCCCCACAGCCGC
tcctcac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcttaagccactcacctggtgcacctgcacagcgcacctacacacggcttggtccaagcacccaacattcctcaccgcccatgcccacgcggcccacagGGCAAGCTCGTGGACTTGCCCAAGTCCACCGCCACCTCTGGCGTCGCCACGCCCGCGCCCGAGGCTGCCTCCGCGTGAAGGGGCGGGCCCCCACAGCCGC
- - - - -cactcac
- - - - - - - - - - - -acctgca
- - - - - - - - - - - - - - - - - - - - acacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgccca