1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...catcgcatacactgtctttgcgcaacgttttccttgtgctctttaacacatacacaaacacacctcttatggttgttacaacgcacacacgcacacacagGCCAGGTGTGGCCGGCGGTGGAGCGGGGCGGCCCCTCCGGTGAGCTGCCGCCGCATGAGTTCCGAGTCTACTTCAAGGAGGGCGGCATCGGCACCTTCTA
species | Chlamydomonas reinhardtii |
transcript | EDP04517 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGACAAGACAAACTCAATCAGCCCATCTTTGGATGCAACAACCTAGCAG GCCAGGTGTGGCCGGCGGTGGAGCGGTGCGGCCCCTCCGGTGAGCTGCCGCEST: gi|15704957|gb|BI729262.1|BI729262
genomic: CCGACAAGACAAACTCAATCAGCCCATCTTTGGATGCAACAACCTAGCAGgtacggcagt ... gcacacacagGCCAGGTGTGGCCGGCGGTGGAGCGGGGCGGCCCCTCCGGTGAGCTGCCGC
EST: CCGACAAGACAAACTCAATCAGCCCATCTTTGGATGCAACAACCTAGCAG GCCAGGTGTGGCCGGCGGTGGAGCGGGGCGGCCCCTCCGGTGAGCTGCCGCEST: gi|16431187|gb|BI996413.1|BI996413
genomic: CCGACAAGACAAACTCAATCAGCCCATCTTTGGATGCAACAACCTAGCAGgtacggcagt ... gcacacacagGCCAGGTGTGGCCGGCGGTGGAGCGGGGCGGCCCCTCCGGTGAGCTGCCGC
EST: CCGACAAGACAAACTCAATCAGCCCATCTTTGGATGCAACAACCTAGCAG GCCAGGTGTGGCCGGCGGTGGAGCGGGGCGGCCCCTCCGGTGAGCTGCCGCEST: gi|15698079|gb|BI722384.1|BI722384
genomic: CCGACAAGACAAACTCAATCAGCCCATCTTTGGATGCAACAACCTAGCAGgtacggcagt ... gcacacacagGCCAGGTGTGGCCGGCGGTGGAGCGGGGCGGCCCCTCCGGTGAGCTGCCGC
EST: CCGACAAGACAAACTCAATCAGCCCATCTTTGGATGCAACAACCTAGCAG GCCAGGTGTGGCCGGCGGTGGAGCGGGGCGGCCCCTCCGGTGAGCTGCCGC
genomic: CCGACAAGACAAACTCAATCAGCCCATCTTTGGATGCAACAACCTAGCAGgtacggcagt ... gcacacacagGCCAGGTGTGGCCGGCGGTGGAGCGGGGCGGCCCCTCCGGTGAGCTGCCGC
acacatacacaaacacacctcttatggttgttacaacgcacacacgcacacacagGCCAGGTGTGGCCGGCGGTGGAGCGGGGCGGCCCCTCCGGTGAGCTGCCGCCGCATGAGTTCCGAGTCTACTTCAAGGAGGGCGGCATCGGCACCTTCTA
ctttaac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcgcatacactgtctttgcgcaacgttttccttgtgctctttaacacatacacaaacacacctcttatggttgttacaacgcacacacgcacacacagGCCAGGTGTGGCCGGCGGTGGAGCGGGGCGGCCCCTCCGGTGAGCTGCCGCCGCATGAGTTCCGAGTCTACTTCAAGGAGGGCGGCATCGGCACCTTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - gcataca
- - - - - - tgtcttt
- - - - - - - - - - - - - - - - -ttgtgct
- - - - - - - - - - - - - - - - - - - - - ttaacac
- - - - - - - - - - - - - - - - - - - - - - - - -atacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacaca