1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAGGGCGTGCAGACCCGCGTCAAGGGCTGGCAGGCGCGGGGCGCTCTATACCTGTCCAACGTGCGCCTGGTGTTCGTGGCGGACAAGCCGGATGAGCTAGgtgcggcagcatggcacaggccgtaccgtgccgtggctgagagagggaggggccctgcgcagcgggagcacccagccgcagggccggcgggaaagaggtg...
species | Chlamydomonas reinhardtii |
transcript | EDP04517 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTGTCCAACGTGCGCCTGGTGTTCGTGGCGGACAAGCCGGATGAGCTAG GCCTGCACGCGTTTGACTTCCCGCTGGTATACATCCGACAAGACAAACTCAEST: gi|15704957|gb|BI729262.1|BI729262
genomic: CCTGTCCAACGTGCGCCTGGTGTTCGTGGCGGACAAGCCGGATGAGCTAGgtgcggcagc ... atgtttgcagGCCTGCACGCGTTTGACTTCCCGCTGGTATACATCCGACAAGACAAACTCA
EST: CCTGTCCAACGTGCGCCTGGTGTTCGTGGCGGACAAGCCGGATGAGCTAG GCCTGCACGCGTTTGACTTCCCGCTGGTATACATCCGACAAGACAAACTCAEST: gi|16431187|gb|BI996413.1|BI996413
genomic: CCTGTCCAACGTGCGCCTGGTGTTCGTGGCGGACAAGCCGGATGAGCTAGgtgcggcagc ... atgtttgcagGCCTGCACGCGTTTGACTTCCCGCTGGTATACATCCGACAAGACAAACTCA
EST: CCTGTCCAACGTGCGCCTGGTGTTCGTGGCGGACAAGCCGGATGAGCTAG GCCTGCACGCGTTTGACTTCCCGCTGGTATACATCCGACAAGACAAACTCAEST: gi|15698079|gb|BI722384.1|BI722384
genomic: CCTGTCCAACGTGCGCCTGGTGTTCGTGGCGGACAAGCCGGATGAGCTAGgtgcggcagc ... atgtttgcagGCCTGCACGCGTTTGACTTCCCGCTGGTATACATCCGACAAGACAAACTCA
EST: CCTGTCCAACGTGCGCCTGGTGTTCGTGGCGGACAAGCCGGATGAGCTAG GCCTGCACGCGTTTGACTTCCCGCTGGTATACATCCGACAAGACAAACTCA
genomic: CCTGTCCAACGTGCGCCTGGTGTTCGTGGCGGACAAGCCGGATGAGCTAGgtgcggcagc ... atgtttgcagGCCTGCACGCGTTTGACTTCCCGCTGGTATACATCCGACAAGACAAACTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGGCGTGCAGACCCGCGTCAAGGGCTGGCAGGCGCGGGGCGCTCTATACCTGTCCAACGTGCGCCTGGTGTTCGTGGCGGACAAGCCGGATGAGCTAGgtgcggcagcatggcacaggccgtaccgtgccgtggctgagagagggaggggccctgcgcagcgggagcacccagccgcagggccggcgggaaagaggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaccca