1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gggcgcaaagcccagtaatacagtatgcagaacacgctgtgagagggaagacaatactgctttaaaatgtggagcctactgctgccaaccttcccatcagGCATCATCAACTTGTTGCGGTACCTGGACACGGAGGCGCGGAAGCAGGGCGGTGCCGTTTACATGCTCAACGGCAACCACGAATCCCTGAACGTATGCGG
species | Chlamydomonas reinhardtii |
transcript | EDP04484 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTGGTGGTACAGCTCGGCGACGTGCTGGACCGAGGGGACGTGGAGATTG GCATCATCAACTTGTTGCGGTACCTGGACACGGAGGCGCGGAAGCAEST: gi|14236867|gb|BG855683.1|BG855683
genomic: GGTGGTGGTACAGCTCGGCGACGTGCTGGACCGAGGGGACGTGGAGATTGgtgagtaaag ... ttcccatcagGCATCATCAACTTGTTGCGGTACCTGGACACGGAGGCGCGGAAGCA
EST: GGTGGTGGTACAGCTCGGCGACGTGCTGGACCGAGGGGACGTGGAGATTG GCATCATCAACTTGTTGCGGTACCTGGACACGGAGGCGCGGAAGAANGGGC
genomic: GGTGGTGGTACAGCTCGGCGACGTGCTGGACCGAGGGGACGTGGAGATTGgtgagtaaag ... ttcccatcagGCATCATCAACTTGTTGCGGTACCTGGACACGGAGGCGCGGAAGCA-GGGC
ggaagacaatactgctttaaaatgtggagcctactgctgccaaccttcccatcagGCATCATCAACTTGTTGCGGTACCTGGACACGGAGGCGCGGAAGCAGGGCGGTGCCGTTTACATGCTCAACGGCAACCACGAATCCCTGAACGTATGCGG
ccttcccatc CT-rich tract
tttaaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggcgcaaagcccagtaatacagtatgcagaacacgctgtgagagggaagacaatactgctttaaaatgtggagcctactgctgccaaccttcccatcagGCATCATCAACTTGTTGCGGTACCTGGACACGGAGGCGCGGAAGCAGGGCGGTGCCGTTTACATGCTCAACGGCAACCACGAATCCCTGAACGTATGCGG
- gcgcaaa
- - - - - - - - -atacagt
- - - - - - - - - - - - atgcaga
- - - - - - - - - - - - - - - -acacgct
- - - - - - - - - - - - - - - - - - - - - - - gaagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtgga