1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCGGCTCCCACCGAGGAAGCGTCAACGTCGACAACAGTCCTAGGAAACAGCGCGCTTGACCCGCCAACCTACGTGACAGCCACGGGGAGGATCATTGCAAgtaagcaagccatggctttcggacccattgtttcgcatgccgtccgcacgttcctgcgaccgggctgccgaccattcaatcctgttcatgcag
species | Chlamydomonas reinhardtii |
transcript | EDP04484 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCGCTTGACCCGCCAACCTACGTGACAGCCACGGGGAGGATCATTGCAA TTGGGGACCTGCACGGCGACCTCGACAAAGCCGTTGAGGCACTGAAGCTCGEST: gi|49470291|gb|BP098152.1|BP098152
genomic: CGCGCTTGACCCGCCAACCTACGTGACAGCCACGGGGAGGATCATTGCAAgtaagcaagc ... gttcatgcagTTGGGGACCTGCACGGCGACCTCGACAAAGCCGTTGAGGCACTGAAGCTCG
EST: CGCGCTTGACCCGCCAACCTACGTGACAGCCACGGGGAGGATCATTGCAA TTGGGGACCTGCACGGCGACCTCGACAAAGCCGTTGAGGCACTGAAGCTCGEST: gi|15697580|gb|BI721885.1|BI721885
genomic: CGCGCTTGACCCGCCAACCTACGTGACAGCCACGGGGAGGATCATTGCAAgtaagcaagc ... gttcatgcagTTGGGGACCTGCACGGCGACCTCGACAAAGCCGTTGAGGCACTGAAGCTCG
EST: CGCGCTTGACCCGCCAACCTACGTGACAGCCACGGGGAGGATCATTGCAA TTGGGGACCTGCACGGCGACCTCGACAAAGCCGTTGAGGCACTGAAGCTCGEST: gi|14236867|gb|BG855683.1|BG855683
genomic: CGCGCTTGACCCGCCAACCTACGTGACAGCCACGGGGAGGATCATTGCAAgtaagcaagc ... gttcatgcagTTGGGGACCTGCACGGCGACCTCGACAAAGCCGTTGAGGCACTGAAGCTCG
EST: CGCGCTTGACCCGCCAACCTACGTGACAGCCACGGGGAGGATCATTGCAA TTGGGGACCTGCACGGCGACCTCGACAAAGCCGTTGAGGCACTGAAGCTCG
genomic: CGCGCTTGACCCGCCAACCTACGTGACAGCCACGGGGAGGATCATTGCAAgtaagcaagc ... gttcatgcagTTGGGGACCTGCACGGCGACCTCGACAAAGCCGTTGAGGCACTGAAGCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGCTCCCACCGAGGAAGCGTCAACGTCGACAACAGTCCTAGGAAACAGCGCGCTTGACCCGCCAACCTACGTGACAGCCACGGGGAGGATCATTGCAAgtaagcaagccatggctttcggacccattgtttcgcatgccgtccgcacgttcctgcgaccgggctgccgaccattcaatcctgttcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT