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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggtggcagcggcggcggcagtgcgccacatagccgcgagtagccgcatgagcacatgctgtcttgcccagttgccaaagaatgggagtgtcacgacgaggatggtgctttctggtgaagccgcacacacccctgcgtggcatttgaggtccgttcccgccctggcctacagACCCATCTACGCGGGCAACGCCTTTGCGACTGTGCAGTTCAAGTCCCCGCCCGCCGTGCGTGTCGTTACG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04450
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22068155|gb|BQ818094.1|BQ818094
EST:     CAGCCGGTGACTGACGTGGTGCGCATTGTAGACGACAACACATTCGTCAG                         ACCCATCTACGCGGGCAACGCCTTTGCGACTGTGCAGTTCAAGTCCCCGCC
genomic: CAGCCGGTGACTGACGTGGTGCGCATTGTAGACGACAACACATTCGTCAGgtgcggtggc ... tggcctacagACCCATCTACGCGGGCAACGCCTTTGCGACTGTGCAGTTCAAGTCCCCGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagccgcacacacccctgcgtggcatttgaggtccgttcccgccctggcctacagACCCATCTACGCGGGCAACGCCTTTGCGACTGTGCAGTTCAAGTCCCCGCCCGCCGTGCGTGTCGTTACG
                                tccgttcccgccct  CT-rich tract