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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggagcgcgggctgtagttgcagctgcagctgtcagtggacccacgcacccgcctcatgcagcaatttgcagctgtgacatgacctgatcgctcgcccaaccgtacgcaacagcaagctcgagtcccggccaccgccgctggtcattccgcacaccgccggctgctcctgctcgtgcagGGGCGCAACGTGCTGCCGCGGGCGGCCGCCCTGCTGGCCACACAGCCGGTGACTGACGTGGTGCGCATTGTAGACGACAACACATTCGTCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04450
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15369975|gb|BI529401.1|BI529401
EST:     GCAGAAGCCCAGCCACGTCCTAGCGGTCAGCACTGCTCAG                         GGGCGCAACGTGC
genomic: GCAGAAGCCCAGCCACGTCCTAGCGGCCAGCACTGCTCAGgtacggagcg ... gctcgtgcagGGGCGCAACGTGC
EST: gi|22068155|gb|BQ818094.1|BQ818094
EST:     GCAGAAGCCCAGCCACGTCCTAGCGGCCAGCACTGCTCAG                         GGGCGCAACGTGCTGCCGCGGGCGGCCGCCCTGCTGGCCACACAGCCGGTG
genomic: GCAGAAGCCCAGCCACGTCCTAGCGGCCAGCACTGCTCAGgtacggagcg ... gctcgtgcagGGGCGCAACGTGCTGCCGCGGGCGGCCGCCCTGCTGGCCACACAGCCGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccggccaccgccgctggtcattccgcacaccgccggctgctcctgctcgtgcagGGGCGCAACGTGCTGCCGCGGGCGGCCGCCCTGCTGGCCACACAGCCGGTGACTGACGTGGTGCGCATTGTAGACGACAACACATTCGTCAG
                                        ctcctgctc  CT-rich tract