1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATTAAGTATGTTCGGGCGCACTGCGACGTGTGCGCGGCCAGCGCTGACGACGCAACGGTGCGACGCTTCATCCGGGCCACTGGCGGCAATCTCGCATTGgtgagttgtgaaggcctcgcttgccgtcaacagacatcgccgggctattgtgtccaggatttatggggcagcgccagcagtggctacggcagtggctgtg...
species | Chlamydomonas reinhardtii |
transcript | EDP04405 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACGCAACGGTGCGACGCTTCATCCGGGCCACTGGCGGCAATCTCGCATTG TCCGTCAAGCGCCTGAACGCCACGTGTGCCTGGCGCGCGTCCGTGCGGCCGEST: gi|16436652|gb|BM001872.1|BM001872
genomic: ACGCAACGGTGCGACGCTTCATCCGGGCCACTGGCGGCAATCTCGCATTGgtgagttgtg ... cgccccgcagTCCGTCAAGCGCCTGAACGCCACGTGTGCCTGGCGCGCGTCCGTGCGGCCG
EST: ACGCAACGGTGCGACGCTTCATCCGGGCCACTGGCGGCAATCTCGCATTG TCCGTCAAGCGCCTGAACGCCACGTGTGCCTGGCGCGCGTCCGTGCGGCCGEST: gi|15700364|gb|BI724669.1|BI724669
genomic: ACGCAACGGTGCGACGCTTCATCCGGGCCACTGGCGGCAATCTCGCATTGgtgagttgtg ... cgccccgcagTCCGTCAAGCGCCTGAACGCCACGTGTGCCTGGCGCGCGTCCGTGCGGCCG
EST: ACGCAACGGTGCGACGCTTCATCCGGGCCACTGGCGGCAATCTCGCATTG TCCGTCAAGCGCCTGAACGCCACGTGTGCCTGGCGCGCGTCCGTGCGGCCG
genomic: ACGCAACGGTGCGACGCTTCATCCGGGCCACTGGCGGCAATCTCGCATTGgtgagttgtg ... cgccccgcagTCCGTCAAGCGCCTGAACGCCACGTGTGCCTGGCGCGCGTCCGTGCGGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTAAGTATGTTCGGGCGCACTGCGACGTGTGCGCGGCCAGCGCTGACGACGCAACGGTGCGACGCTTCATCCGGGCCACTGGCGGCAATCTCGCATTGgtgagttgtgaaggcctcgcttgccgtcaacagacatcgccgggctattgtgtccaggatttatggggcagcgccagcagtggctacggcagtggctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctgt