1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttcacaccctggctcacatgacagggcctagtgcatacgcccgcggctgccccccaagggacgtaatatagtgccgaccccctgtctggtctccccccagGTATTGGCAACATCCCGCCCCTCCAGCGAGGCAAGTGACGCCAGCGTCACGGATGACGCATTTAGCCCCCAGGCCAGCAGCGTGCTCGCCTCGGCCTCCA
species | Chlamydomonas reinhardtii |
transcript | EDP04405 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCGAGCCAGCCGTCTCTAAACGCCAGGACCAGACCCCATTATGAATCAA GTATTGGCAACATCCCGCCCCTCCAGCGAGGCAAGTGACGCCAGCGTCACGEST: gi|16436652|gb|BM001872.1|BM001872
genomic: CGCGAGCCAGCCGTCTCTAAACGCCAGGACCAGACCCCATTATGAATCAAgtaagctcat ... ctccccccagGTATTGGCAACATCCCGCCCCTCCAGCGAGGCAAGTGACGCCAGCGTCACG
EST: CGCGAGCCAGCCGTCTCTAAACGCCAGGACCAGACCCCATTATGAATCAA GTATTGGCAACATCCCGCCCCTCCAGCGAGGCAAGTGACGCCAGCGTCACGEST: gi|15700364|gb|BI724669.1|BI724669
genomic: CGCGAGCCAGCCGTCTCTAAACGCCAGGACCAGACCCCATTATGAATCAAgtaagctcat ... ctccccccagGTATTGGCAACATCCCGCCCCTCCAGCGAGGCAAGTGACGCCAGCGTCACG
EST: CCATTATGAATCAA GTATTGGCAACATCCCGCCCCTCCAGCGAGGCAAGTGACGCCAGCGTCACG
genomic: CCATTATGAATCAAgtaagctcat ... ctccccccagGTATTGGCAACATCCCGCCCCTCCAGCGAGGCAAGTGACGCCAGCGTCACG
gctgccccccaagggacgtaatatagtgccgaccccctgtctggtctccccccagGTATTGGCAACATCCCGCCCCTCCAGCGAGGCAAGTGACGCCAGCGTCACGGATGACGCATTTAGCCCCCAGGCCAGCAGCGTGCTCGCCTCGGCCTCCA
ccccctgtctggtctc CT-rich tract
taatatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcacaccctggctcacatgacagggcctagtgcatacgcccgcggctgccccccaagggacgtaatatagtgccgaccccctgtctggtctccccccagGTATTGGCAACATCCCGCCCCTCCAGCGAGGCAAGTGACGCCAGCGTCACGGATGACGCATTTAGCCCCCAGGCCAGCAGCGTGCTCGCCTCGGCCTCCA
- cacaccc
- - - - - -gctcaca
- - - - - - - - - - - - - - - - -catacgc