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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCAAGGTGACCACGATGATGCCAGTGTCCGTGCCCAAGGTGCTGTGCCGGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTACgtaagtggggtccacgcggtggactggtgctgcggtaggcaggagagctggggttggagaccagggtttggggcatgcagacgtggcgaagcccatcgaa...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04400
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10771579|gb|AV622402.1|AV622402
EST:     GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTAC                         ACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
genomic: GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTACgtaagtgggg ... acacccacagACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
EST: gi|15371138|gb|BI530564.1|BI530564
EST:     GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTAC                         ACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
genomic: GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTACgtaagtgggg ... acacccacagACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
EST: gi|16435224|gb|BM000444.1|BM000444
EST:     GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTAC                         ACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
genomic: GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTACgtaagtgggg ... acacccacagACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
EST: gi|15701789|gb|BI726094.1|BI726094
EST:     GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTAC                         ACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
genomic: GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTACgtaagtgggg ... acacccacagACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
EST: gi|8287530|gb|BE025089.1|BE025089
EST:     GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTAC                         ACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
genomic: GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTACgtaagtgggg ... acacccacagACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
EST: gi|14232434|gb|BG851250.1|BG851250
EST:     GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTAC                         ACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
genomic: GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTACgtaagtgggg ... acacccacagACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
EST: gi|8287522|gb|BE025081.1|BE025081
EST:     GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTAC                         ACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
genomic: GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTACgtaagtgggg ... acacccacagACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
EST: gi|161798605|gb|FC085777.1|FC085777
EST:     GGCCACCTGGGCAGAGGCAGTCTGAGTGGGTGGACCTGTGGGAGGCCTAC                         ACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
genomic: GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTACgtaagtgggg ... acacccacagACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
EST: gi|10773922|gb|AV624745.1|AV624745
EST:     GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTAC                         ACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTG
genomic: GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTACgtaagtgggg ... acacccacagACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTG
EST: gi|15692633|gb|BI716938.1|BI716938
EST:     GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTAC                         ACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
genomic: GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTACgtaagtgggg ... acacccacagACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
EST: gi|9461085|gb|BE453557.1|BE453557
EST:     GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTAC                         ACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
genomic: GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTACgtaagtgggg ... acacccacagACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
EST: gi|10773312|gb|AV624135.1|AV624135
EST:     GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTAC                         ACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
genomic: GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTACgtaagtgggg ... acacccacagACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
EST: gi|10771339|gb|AV622162.1|AV622162
EST:     GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTAC                         ACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC
genomic: GGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTACgtaagtgggg ... acacccacagACCTACCAGAAGGTGGTGTTCATCAAGGAGGCGATCACGGAGGACGTGGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGCAAGGTGACCACGATGATGCCAGTGTCCGTGCCCAAGGTGCTGTGCCGGCCACCTGGGCAGAGGCAGTCCGAGTGGGTGGACCTGTGGGAGGCCTACgtaagtggggtccacgcggtggactggtgctgcggtaggcaggagagctggggttggagaccagggtttggggcatgcagacgtggcgaagcccatcgaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
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