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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATTTGTTGCATTTCGCCTCGGAGGTTGTTGTTCTAGTCGCTTTGCATAGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttgacgcgaggcactggtgccggcgagcgcagaaggcgtagatctggaaccgctgctccgcgcaaacaactcctgcatagtaatgatgaactttggtggtcatgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04400
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10771579|gb|AV622402.1|AV622402
EST:     AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG                         GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: gi|15371138|gb|BI530564.1|BI530564
EST:     AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG                         GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: gi|16435224|gb|BM000444.1|BM000444
EST:     AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG                         GGCCACGACAAATACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: gi|10789074|gb|AV626794.1|AV626794
EST:     AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG                         GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: gi|22049140|gb|BQ808589.1|BQ808589
EST:     AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG                         GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: gi|15701789|gb|BI726094.1|BI726094
EST:     AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG                         GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: gi|8287530|gb|BE025089.1|BE025089
EST:     AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG                         GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: gi|14232434|gb|BG851250.1|BG851250
EST:     AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG                         GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: gi|8287522|gb|BE025081.1|BE025081
EST:     AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG                         GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: gi|161798605|gb|FC085777.1|FC085777
EST:     AGTAGCTTATACTAGCAGCACATGCAGGCGCTGAACCAGCGGCCCTCGAG                         GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: gi|10773922|gb|AV624745.1|AV624745
EST:     AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG                         GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: gi|15692633|gb|BI716938.1|BI716938
EST:     AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG                         GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: gi|10790307|gb|AV627673.1|AV627673
EST:     AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG                         GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: gi|10773312|gb|AV624135.1|AV624135
EST:     AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG                         GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: gi|10771339|gb|AV622162.1|AV622162
EST:     AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG                         GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC