1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cgcaaactgtatgttcctgctgtgcctactgcacgtcggtaacaatccttgcaacccccgtctaccacatcatcaactaatcatgaatgtaaccccccagTGAACAACGTGGGCACCAACATTCGCAAACCCACGGTGGAGTACTCGGAGGAG
species | Chlamydomonas reinhardtii |
transcript | EDP04389 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTCGCGGCCAAGGTGTCCGAGGCCTTTGGCGGCAAGCTCAACATACTGG TGAACAACGTGGGCACCAACATTCGCAAACCCACGGTGGAGTACTEST: gi|49468801|gb|BP096662.1|BP096662
genomic: GCTCGCGGCCAAGGTGTCCGAGGCCTTTGGCGGCAAGCTCAACATACTGGgtgggtgggt ... aaccccccagTGAACAACGTGGGCACCAACATTCGCAAACCCACGGTGGAGTACT
EST: GCTCGCGGCCAAGGTGTCCGAGGCCTTCGGCGGCAAGCTCAACATACTGG TGAACAACGTGGGCACCAACATTCGCAAACCCACGGEST: gi|10127144|gb|BE725848.1|BE725848
genomic: GCTCGCGGCCAAGGTGTCCGAGGCCTTTGGCGGCAAGCTCAACATACTGGgtgggtgggt ... aaccccccagTGAACAACGTGGGCACCAACATTCGCAAACCCACGG
EST: GCTCGCGGCCAAGGTGTCCGAGGCCTTTGGCGGCAAGCTCAACATACTGG TGAACAACGTGGGCACCAACATTCGCAAACCCACGGTGGAGTACTCGNAGG
genomic: GCTCGCGGCCAAGGTGTCCGAGGCCTTTGGCGGCAAGCTCAACATACTGGgtgggtgggt ... aaccccccagTGAACAACGTGGGCACCAACATTCGCAAACCCACGGTGGAGTACTCGGAGG
tccttgcaacccccgtctaccacatcatcaactaatcatgaatgtaaccccccagTGAACAACGTGGGCACCAACATTCGCAAACCCACGGTGGAGTACTCGGAGGAG
cccccc CT-rich tract
aactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcaaactgtatgttcctgctgtgcctactgcacgtcggtaacaatccttgcaacccccgtctaccacatcatcaactaatcatgaatgtaaccccccagTGAACAACGTGGGCACCAACATTCGCAAACCCACGGTGGAGTACTCGGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
cgcaaac
- - - -tgtatgt
- - - - - - - - - - tgtgcct
- - - - - - - - - - - - - - - - - - - - aacaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatgt