1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggccctccctatgttggacagcgcgcgcagtgctgaacatacagctgtacgtggtagtgttgagccctttacccccccccccaccggcccccgcgtgcagATCTTCGTGTGCGCGCGCAGCGCCGACGACTTGGCGACACAGCTGGAGGGGTGGCGCGCGGCAGGACTGGATGTGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP04389 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGGCATCGGCAAAGCCATTGTGGAAGAGTTGGGCAAGCTTGGAGCCAAG ATCTTCGTGTGCGCGCGCAGCGCCGACGACTTGGCGACACAGCTGGAGGGGEST: gi|49468801|gb|BP096662.1|BP096662
genomic: GGGGCATCGGCAAAGCCATTGTGGAAGAGTTGGGCAAGCTTGGAGCCAAGgtggggtagc ... ccgcgtgcagATCTTCGTGTGCGCGCGCAGCGCCGACGACTTGGCGACACAGCTGGAGGGG
EST: GGGGCATCGGCAAAGCCATTGTGGAAGAGTTGGGCAAGCTTGGAGCCAAG ATCTTCGTGTGCGCGCGCAGCGCCGACGACTTGGCGACACAGCTGGAGGGGEST: gi|10127144|gb|BE725848.1|BE725848
genomic: GGGGCATCGGCAAAGCCATTGTGGAAGAGTTGGGCAAGCTTGGAGCCAAGgtggggtagc ... ccgcgtgcagATCTTCGTGTGCGCGCGCAGCGCCGACGACTTGGCGACACAGCTGGAGGGG
EST: GGGGCATCGGCAAAGCCATTGTGGAAGAGTTGGGCAAGCTTGGAGCCAAG ATCTTCGTGTGCGCGCGCAGCGCCGACGACTTGGCGACACAGCTGGAGGGG
genomic: GGGGCATCGGCAAAGCCATTGTGGAAGAGTTGGGCAAGCTTGGAGCCAAGgtggggtagc ... ccgcgtgcagATCTTCGTGTGCGCGCGCAGCGCCGACGACTTGGCGACACAGCTGGAGGGG
tgtacgtggtagtgttgagccctttacccccccccccaccggcccccgcgtgcagATCTTCGTGTGCGCGCGCAGCGCCGACGACTTGGCGACACAGCTGGAGGGGTGGCGCGCGGCAGGACTGGATGTGCAG
ccctttaccccccccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggccctccctatgttggacagcgcgcgcagtgctgaacatacagctgtacgtggtagtgttgagccctttacccccccccccaccggcccccgcgtgcagATCTTCGTGTGCGCGCGCAGCGCCGACGACTTGGCGACACAGCTGGAGGGGTGGCGCGCGGCAGGACTGGATGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - -tatgttg
- - - - - - - - - - - - - - - - - - acataca
- - - - - - - - - - - - - - - - - - - - - - -tgtacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - tagtgtt