1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gaagcggggctgcaagggaccggcatgggcaaaccaccctgccccccatctgacggtgaccccccgccccacgcccatgaccccctcccgcatcctcaagGTGGGTGTGGCCACCGACACGGCCCGCCGCATCCGGGCCGAGCAGGCCATGGCCAAGTACCAGGACGTGGACAAGCTGTACGACAACATGAAGATGTAAA
species | Chlamydomonas reinhardtii |
transcript | EDP04388 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CGCACCTGACTGCCTTCCGCGGCTTCGCCGGCACCTCGGTGCTCATCATG GTGGGTGTGGCCACCGACACGGCCCGCCGCATTCGGGCCGAGCAGGCCATGEST: gi|16429715|gb|BI994941.1|BI994941
genomic: CGCACCTGACTGCCTTCCGCGGCTTCGCCGGCACCTCGGTGCTCATCATGgtgagagaga ... catcctcaagGTGGGTGTGGCCACCGACACGGCCCGCCGCATCCGGGCCGAGCAGGCCATG
EST: CCGGCACCTCGGTGCTCATCATG GTGGGTGTGGCCACCGACACGGCCCGCCGCATCCGGGCCGAGCAGGCCATG
genomic: CCGGCACCTCGGTGCTCATCATGgtgagagaga ... catcctcaagGTGGGTGTGGCCACCGACACGGCCCGCCGCATCCGGGCCGAGCAGGCCATG
ccatctgacggtgaccccccgccccacgcccatgaccccctcccgcatcctcaagGTGGGTGTGGCCACCGACACGGCCCGCCGCATCCGGGCCGAGCAGGCCATGGCCAAGTACCAGGACGTGGACAAGCTGTACGACAACATGAAGATGTAAA
atctgac putative branch site (score: 3)
ccccctcccgcatcct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagcggggctgcaagggaccggcatgggcaaaccaccctgccccccatctgacggtgaccccccgccccacgcccatgaccccctcccgcatcctcaagGTGGGTGTGGCCACCGACACGGCCCGCCGCATCCGGGCCGAGCAGGCCATGGCCAAGTACCAGGACGTGGACAAGCTGTACGACAACATGAAGATGTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - -caaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgccca