Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcagcccgaccatgcgggatggcagttgggttcgcgtccaacaacggacgcggtggctgtaatttgtttgtagcagttctttgtgcctgagtgtcatggtgtatggctgcgtttccggttaagtctcaggccacacgggttccgtttctgaagtacatcctttcgttgcccacagATTGCCGTCGCGACCGCTCCCGCGCCCGCCGCCACCGCCAGCCCCTTCGCGGCGCTTCCTTCCCAGTGGCTTGTGGTGACGTCCGCCGCGCACTGGTTCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04370
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8513600|gb|BE121495.1|BE121495
EST:     CCTTGGAGGTTGCGACCTCCAGCTGGCAGGCTGCGCAGTCTTCCACAAAG                         ATTGCCGTCGCGACCGGTCCCGCGCCCG
genomic: CCTTGGAGGTTGCGACCTCCAGCTGGCAGGCTGCGCAGTCTTCCACAAAGgtatgcagcc ... ttgcccacagATTGCCGTCGCGACCGCTCCCGCGCCCG
EST: gi|10783317|gb|AV639989.1|AV639989
EST:     CCTTGGAGGTTGCGACCTCCAGCTGGCAGGCTGCGCAGTCTTCCACAAAG                         ATTGCCGTCGCGACCGGTCCCGCGCCCGCCGNCACCGNCAGCCCCTTCGCG
genomic: CCTTGGAGGTTGCGACCTCCAGCTGGCAGGCTGCGCAGTCTTCCACAAAGgtatgcagcc ... ttgcccacagATTGCCGTCGCGACCGCTCCCGCGCCCGCCGCCACCGCCAGCCCCTTCGCG
EST: gi|23364890|gb|BU652710.1|BU652710
EST:     CCTTGGAGGTTGCGACCTCCAGCTGGCAGGCTGCGCAGTCTTCCACAAAG                         ATTGCCGTCGCGACCGCTCCCGCGCCCGCCGCCACCGCCAGCCCCTTCGCG
genomic: CCTTGGAGGTTGCGACCTCCAGCTGGCAGGCTGCGCAGTCTTCCACAAAGgtatgcagcc ... ttgcccacagATTGCCGTCGCGACCGCTCCCGCGCCCGCCGCCACCGCCAGCCCCTTCGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtctcaggccacacgggttccgtttctgaagtacatcctttcgttgcccacagATTGCCGTCGCGACCGCTCCCGCGCCCGCCGCCACCGCCAGCCCCTTCGCGGCGCTTCCTTCCCAGTGGCTTGTGGTGACGTCCGCCGCGCACTGGTTCG
                                     tcctttcgttgccc  CT-rich tract